Does DynaMight work for tomography?

[rdrighetto]

Hi,

I tried to run DynaMight on a dataset I processed with relion --tomo (v5.0) where particles are stored as 2D tilt stacks.

I tried:

dynamight optimize-deformations --refinement-star-file Refine3D/ribo_tm2_bin1_ref3d5_ctfref2_polish2/run_data.star --output-directory dynamight/ --initial-model ribo.mrc

And it gives this error:

Training on GPU 0
Initializing the particle dataset
list index out of range

Is DynaMight supposed to work with this type of data, or is there something else going wrong here?

Thank you!

[alisterburt]

Hey @rdrighetto - dynamight was written for SPA only

[rdrighetto]

Thanks for the quick reply @alisterburt! Are there any prospects of making it work for tomography data?

ps: why can't I react with a sobbing emoji 😭

[alisterburt]

😂 I haven't heard about any plans to make it work for tomography data but I'm also not in the loop with current goings on in Sjors' lab