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Hello,
After running all the steps for the example files, I am getting this error when running the PHACE.R code. I f I change the PHACE.R line 248 to (pos1_totalscore, na.rm = TRUE) >=1 && sum(pos2_totalscore, na.rm = TRUE) the code runs, but the "PHACE_Score" in the output is -1 for all the pairs. Can you help? All the intermediate files are default from your tutorial.
Rscript PHACE.R Q5SRN2
[1] 1 2
Error in if (sum(pos1_totalscore) >= 1 && sum(pos2_totalscore) >= 1 && :
missing value where TRUE/FALSE needed
Execution halted
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