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Tune indexing performance #10

@glennhickey

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@glennhickey

There are some questions that can be answered empirically

  • What kind of interval do we want between anchor lines ?
  • How big should index blocks be (also, they should probably be explicitly be defined on bytes rather than reference bp)?
  • Can we make the index offsets in uncompressed space (I had to switch to bgzip-native coordinates to get it working, but hopefully there's a way to not need this)?
  • Should .tai files be bgzipped by default by taffy index (probably yes, easy to test)

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