From a6dd4d9fcc897895b20208c86fa53a9b2f8c3d90 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 19 Jan 2026 16:32:36 +0000 Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v5.0.0...v6.0.0) - https://github.com/psf/black → https://github.com/psf/black-pre-commit-mirror - [github.com/psf/black-pre-commit-mirror: 24.8.0 → 26.1.0](https://github.com/psf/black-pre-commit-mirror/compare/24.8.0...26.1.0) - [github.com/PyCQA/flake8: 7.1.1 → 7.3.0](https://github.com/PyCQA/flake8/compare/7.1.1...7.3.0) - [github.com/pycqa/isort: 5.13.2 → 7.0.0](https://github.com/pycqa/isort/compare/5.13.2...7.0.0) --- .pre-commit-config.yaml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index da3e556..98b1e80 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -4,22 +4,22 @@ fail_fast: false repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v5.0.0 + rev: v6.0.0 hooks: - id: end-of-file-fixer - id: trailing-whitespace - - repo: https://github.com/psf/black - rev: 24.8.0 + - repo: https://github.com/psf/black-pre-commit-mirror + rev: 26.1.0 hooks: - id: black args: [--line-length=128, --verbose] - repo: https://github.com/PyCQA/flake8 - rev: 7.1.1 + rev: 7.3.0 hooks: - id: flake8 args: [--max-line-length=128, '--exclude=./.*,build,dist,official*,torch_ecg,references,*.ipynb', '--ignore=E501,W503,E203,F841,E402,E231', --count, --statistics, --show-source] - repo: https://github.com/pycqa/isort - rev: 5.13.2 + rev: 7.0.0 hooks: - id: isort args: [--profile=black, --line-length=128] From 43fc021bb3813befb3c14d318342d04ed13b1db3 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 19 Jan 2026 16:33:03 +0000 Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- CPSC2020_challenge.py | 3 +-- cfg.py | 3 +-- data_reader.py | 3 +-- metrics.py | 3 +-- metrics_test.py | 3 +-- model.py | 3 +-- phase_one_legacy/CPSC2020_challenge.py | 3 +-- phase_one_legacy/CPSC2020_challenge_test.py | 3 +-- phase_one_legacy/cfg.py | 3 +-- phase_one_legacy/data_reader.py | 3 +-- .../models/dl_models/train_model_dl.py | 3 +-- phase_one_legacy/models/load_model.py | 3 +-- saved_models/__init__.py | 3 +-- signal_processing/__init__.py | 3 +-- train.py | 9 +++------ utils.py | 14 ++++---------- 16 files changed, 21 insertions(+), 44 deletions(-) diff --git a/CPSC2020_challenge.py b/CPSC2020_challenge.py index c1b0970..057d2c1 100644 --- a/CPSC2020_challenge.py +++ b/CPSC2020_challenge.py @@ -1,5 +1,4 @@ -""" -""" +""" """ import math import time diff --git a/cfg.py b/cfg.py index d8b2248..5d62651 100644 --- a/cfg.py +++ b/cfg.py @@ -1,5 +1,4 @@ -""" -""" +""" """ import os from copy import deepcopy diff --git a/data_reader.py b/data_reader.py index 4f776a8..19333ef 100644 --- a/data_reader.py +++ b/data_reader.py @@ -1,5 +1,4 @@ -""" -""" +""" """ import argparse import logging diff --git a/metrics.py b/metrics.py index 1207477..76272cd 100644 --- a/metrics.py +++ b/metrics.py @@ -1,5 +1,4 @@ -""" -""" +""" """ from numbers import Real from typing import Any, List, Optional, Sequence, Tuple, Union diff --git a/metrics_test.py b/metrics_test.py index 72f5037..ad4c356 100644 --- a/metrics_test.py +++ b/metrics_test.py @@ -1,5 +1,4 @@ -""" -""" +""" """ from typing import Any, List, Optional, Tuple, Union diff --git a/model.py b/model.py index 9720957..d2c3170 100644 --- a/model.py +++ b/model.py @@ -1,5 +1,4 @@ -""" -""" +""" """ import sys from copy import deepcopy diff --git a/phase_one_legacy/CPSC2020_challenge.py b/phase_one_legacy/CPSC2020_challenge.py index 11ef968..7a78bdf 100644 --- a/phase_one_legacy/CPSC2020_challenge.py +++ b/phase_one_legacy/CPSC2020_challenge.py @@ -1,5 +1,4 @@ -""" -""" +""" """ from numbers import Real from typing import Tuple diff --git a/phase_one_legacy/CPSC2020_challenge_test.py b/phase_one_legacy/CPSC2020_challenge_test.py index 77cf680..a848fdc 100644 --- a/phase_one_legacy/CPSC2020_challenge_test.py +++ b/phase_one_legacy/CPSC2020_challenge_test.py @@ -1,5 +1,4 @@ -""" -""" +""" """ import argparse import os diff --git a/phase_one_legacy/cfg.py b/phase_one_legacy/cfg.py index 1ddc9e7..f38685e 100644 --- a/phase_one_legacy/cfg.py +++ b/phase_one_legacy/cfg.py @@ -1,5 +1,4 @@ -""" -""" +""" """ import os from copy import deepcopy diff --git a/phase_one_legacy/data_reader.py b/phase_one_legacy/data_reader.py index 3287bde..58b8599 100644 --- a/phase_one_legacy/data_reader.py +++ b/phase_one_legacy/data_reader.py @@ -1,5 +1,4 @@ -""" -""" +""" """ import argparse import logging diff --git a/phase_one_legacy/models/dl_models/train_model_dl.py b/phase_one_legacy/models/dl_models/train_model_dl.py index 37a15a1..49880fd 100644 --- a/phase_one_legacy/models/dl_models/train_model_dl.py +++ b/phase_one_legacy/models/dl_models/train_model_dl.py @@ -1,5 +1,4 @@ -""" -""" +""" """ import os import sys diff --git a/phase_one_legacy/models/load_model.py b/phase_one_legacy/models/load_model.py index 72bf02a..f6895c0 100644 --- a/phase_one_legacy/models/load_model.py +++ b/phase_one_legacy/models/load_model.py @@ -1,5 +1,4 @@ -""" -""" +""" """ import os import pickle diff --git a/saved_models/__init__.py b/saved_models/__init__.py index 29a1bb5..1814372 100644 --- a/saved_models/__init__.py +++ b/saved_models/__init__.py @@ -1,5 +1,4 @@ -""" -""" +""" """ import os from typing import Optional, Tuple, Union diff --git a/signal_processing/__init__.py b/signal_processing/__init__.py index c0f6f28..bc68a39 100644 --- a/signal_processing/__init__.py +++ b/signal_processing/__init__.py @@ -1,2 +1 @@ -""" -""" +""" """ diff --git a/train.py b/train.py index 9f10bad..3404340 100644 --- a/train.py +++ b/train.py @@ -1,5 +1,4 @@ -""" -""" +""" """ import argparse import logging @@ -436,8 +435,7 @@ def evaluate_crnn( head_labels = all_labels[:head_num, ...] head_labels_classes = [np.array(classes)[np.where(row)] for row in head_labels] for n in range(head_num): - print( - f""" + print(f""" ---------------------------------------------- scalar prediction: {[round(n, 3) for n in head_scalar_preds[n].tolist()]} binary prediction: {head_bin_preds[n].tolist()} @@ -445,8 +443,7 @@ def evaluate_crnn( predicted classes: {head_preds_classes[n].tolist()} label classes: {head_labels_classes[n].tolist()} ---------------------------------------------- - """ - ) + """) auroc, auprc, accuracy, f_measure, f_beta_measure, g_beta_measure = eval_score( classes=classes, diff --git a/utils.py b/utils.py index ef161d6..aa15800 100644 --- a/utils.py +++ b/utils.py @@ -926,9 +926,7 @@ def init_logger(log_dir: str, log_file: Optional[str] = None, mode: str = "a", v return logger -CPSC_STATS = pd.read_csv( - StringIO( - """rec,AF,len_h,N_beats,V_beats,S_beats,total_beats +CPSC_STATS = pd.read_csv(StringIO("""rec,AF,len_h,N_beats,V_beats,S_beats,total_beats A01,No,25.89,109062,0,24,109086 A02,Yes,22.83,98936,4554,0,103490 A03,Yes,24.70,137249,382,0,137631 @@ -938,19 +936,15 @@ def init_logger(log_dir: str, log_file: Optional[str] = None, mode: str = "a", v A07,No,23.11,73325,15150,3481,91956 A08,Yes,25.46,115518,2793,0,118311 A09,No,25.84,88229,2,1462,89693 -A10,No,23.64,72821,169,9071,82061""" - ) -) +A10,No,23.64,72821,169,9071,82061""")) # columns truth, rows pred OFFICIAL_LOSS_DF = pd.read_csv( - StringIO( - """,N_true,S_true,V_true + StringIO(""",N_true,S_true,V_true N_pred,0,5,5 S_pred,1,0,5 -V_pred,1,5,0""" - ), +V_pred,1,5,0"""), index_col=0, ) OFFICIAL_LOSS_MAT = OFFICIAL_LOSS_DF.values