diff --git a/data/modules/custom_csv/metrics_summary.csv b/data/modules/custom_csv/metrics_summary.csv new file mode 100644 index 00000000..9e8031b9 --- /dev/null +++ b/data/modules/custom_csv/metrics_summary.csv @@ -0,0 +1,27 @@ +Category,Library Type,Grouped By,Group Name,Metric Name,Metric Value +Cells,Gene Expression,,,Cells,"1,006" +Cells,Gene Expression,,,Confidently mapped reads in cells,23.5% +Cells,Gene Expression,,,Mean reads per cell,"26,009" +Cells,Gene Expression,,,Median UMI counts per cell,"4,522" +Cells,Gene Expression,,,Median genes per cell,"2,007" +Cells,Gene Expression,,,Total genes detected,"15,700" +Library,Gene Expression,,,Estimated UMIs from genomic DNA,0.8% +Library,Gene Expression,,,Estimated UMIs from genomic DNA per unspliced probe,1 +Library,Gene Expression,Fastq ID,MA4-3-C,Number of reads,"70,000,000" +Library,Gene Expression,Fastq ID,MA4-3-C,Number of short reads skipped,0 +Library,Gene Expression,Fastq ID,MA4-3-C,Q30 RNA read,99.2% +Library,Gene Expression,Fastq ID,MA4-3-C,Q30 UMI,67.5% +Library,Gene Expression,Fastq ID,MA4-3-C,Q30 barcodes,89.4% +Library,Gene Expression,Physical library ID,GEX_1,Cells,"1,009" +Library,Gene Expression,Physical library ID,GEX_1,Confidently mapped reads in cells,67.9% +Library,Gene Expression,Physical library ID,GEX_1,Mean reads per cell,"55,019" +Library,Gene Expression,Physical library ID,GEX_1,Number of reads,"70,000,000" +Library,Gene Expression,Physical library ID,GEX_1,Number of reads in the library,"70,000,000" +Library,Gene Expression,Physical library ID,GEX_1,Reads confidently mapped to filtered probe set,55.6% +Library,Gene Expression,Physical library ID,GEX_1,Reads confidently mapped to probe set,94.5% +Library,Gene Expression,Physical library ID,GEX_1,Reads half-mapped to probe set,13.9% +Library,Gene Expression,Physical library ID,GEX_1,Reads mapped to probe set,89.7% +Library,Gene Expression,Physical library ID,GEX_1,Reads split-mapped to probe set,19.9% +Library,Gene Expression,Physical library ID,GEX_1,Sequencing saturation,34.0% +Library,Gene Expression,Physical library ID,GEX_1,Valid UMIs,29.5% +Library,Gene Expression,Physical library ID,GEX_1,Valid barcodes,76.0%