Error in post-DANCE PairMapper

[Psirving]

Hi Tony,

Since switching to the new code, I've been consistently seeing this error. I end up with _allcorrs.txt being the only output file from PairMapper.

Traceback (most recent call last):
  File "/nas/longleaf/home/psirving/DanceMapper/DanceMapper.py", line 1346, in <module>
    pairs = PairMapper(model, profiles[i])
  File "/nas/longleaf/home/psirving/RingMapper/pairmapper.py", line 45, in __init__
    self.passfilter = self.checkMutationRates(primary_reactivity = primary_reactivity)
  File "/nas/longleaf/home/psirving/RingMapper/pairmapper.py", line 339, in checkMutationRates
    nts = self.parent.getReactiveNts(self.parent.highbgrate, prefix='bg')
  File "/nas/longleaf/home/psirving/RingMapper/ringmapper.py", line 306, in getReactiveNts
    if readarr[i,i] == 0:
TypeError: 'NoneType' object has no attribute '__getitem__'

[Psirving]

The issue was that I was not providing an untreated parsed mutations file. This could use a helpful error message.

[anthonymustoe]

Thanks. Will incorporate.