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issue about foldClusters.py #9

@GDemon486

Description

@GDemon486

Hi Tony,

When I run foldClusters.py, an error occurs.

/work/software/DanceMapper/RNAstructure/exe/Fold: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /work/software/DanceMapper/RNAstructure/exe/Fold)
/work/software/DanceMapper/RNAstructure/exe/Fold: /lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /work/software/DanceMapper/RNAstructure/exe/Fold)
/work/software/DanceMapper/RNAstructure/exe/Fold: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /work/software/DanceMapper/RNAstructure/exe/Fold)
Traceback (most recent call last):
  File "/work/software/DanceMapper/DanceMapper/foldClusters.py", line 140, in <module>
    aplot.addCT( RNAtools.CT(dfile[:-4]+'.ct') )
  File "/work/software/DanceMapper/StructureAnalysisTools_Current/RNAStructureObjects.py", line 62, in __init__
    self.readCT(fIN, **kwargs)
  File "/work/software/DanceMapper/StructureAnalysisTools_Current/RNAStructureObjects.py", line 135, in readCT
    raise IOError("{0} has invalid format or does not exist".format(fIN))
IOError: DanceMap.out-0.ct has invalid format or does not exist

My command is

cd /work/workPATH
python /work/software/DanceMapper/DanceMapper/foldClusters.py --bp DanceMap DanceMap-reactivities.txt DanceMap.out

My working files have
"DanceMap-0-pairmap.txt","DanceMap-0-pairmap.bp","DanceMap-0-allcorrs.txt","DanceMap-0-rings.txt","DanceMap.bm","DanceMap-reactivities.txt"

My output files have
"DanceMap.out-0.dms","DanceMap.out.fa"

It seems to be caused by incorrect installation of RNAstructure. Could you please share your complete package files? Or do you have any other suggestions?

Thank you very much for your help, looking forward to your reply.

Best Regards,
Zhanyu Gao

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