Explicit http://www.open-bio.org/wiki/... links using anchors

[peterjc]

$ grep -oh "\[http://www.open-bio.org/wiki/.*\]" *.mediawiki 
[http://www.open-bio.org/wiki/Codefest_2010 Codefest session]
[http://www.open-bio.org/wiki/Codefest_2010 Codefest 2010 Report]
[http://www.open-bio.org/wiki/Codefest_2012 Codefest 2012]
[http://www.open-bio.org/wiki/Main_Page Open Bioinformatics Foundation]
[http://www.open-bio.org/wiki/Main_Page Open Bioinformatics Foundation:]  A Community For, By, and Of You ([http://www.slideshare.net/hlapp/obf-address-bosc2013 SlideShare] [http://www.youtube.com/watch?v=DiReTX3FoLM YouTube]
[http://www.open-bio.org/wiki/BOSC_2014_Schedule Complete Schedule]
[http://www.open-bio.org/wiki/EU-Codefest_2014 EU-Codefest 2014]
[http://www.open-bio.org/wiki/BOSC_Abstract_Submission submit your abstract here]
[http://www.open-bio.org/wiki/Main_Page Open Bioinformatics Foundation (OBF) update] ([https://youtu.be/1oSTb8ZAxec video]
[http://www.open-bio.org/wiki/BOSC_2017 BOSC 2017]
[http://www.open-bio.org/wiki/Hackathon Hackathons]
[http://www.open-bio.org/wiki/Hackathon Hackathons]
[http://www.open-bio.org/wiki/Hackathon Hackathons]
[http://www.open-bio.org/wiki/Hackathon Hackathons]
[http://www.open-bio.org/wiki/Hackathon Hackathons]
[http://www.open-bio.org/wiki/EU_Codefest_2012 first one]
[http://www.open-bio.org/wiki/Codefest_2014#Goals goals] as the OBF Codefest, which is usually organized along with the [http://www.open-bio.org/wiki/BOSC BOSC]
[http://www.open-bio.org/wiki/Codefest_2014 OBF Codefest]
[http://www.open-bio.org/wiki/File:BOSC2015-abstract-template.pdf PDF]
[http://www.open-bio.org/wiki/Google_Summer_of_Code_2015_Ideas#Biocaml Project ideas]
[http://www.open-bio.org/wiki/Google_Summer_of_Code_2014#Loris_Cro vcf-mongo ]
[http://www.open-bio.org/wiki/Minutes:2013_Apr_ConfCall April 2013 Board meeting minutes]

We want to turn these into relative links, probably via the mediawiki to markdown script using pandoc.

[peterjc]

Fixed most by hand, a couple can stay - the rest have anchors - how do they work with wiki links?:

$ grep  "http://www.open-bio.org/wiki/" *.mediawiki 
BOSC_2006_Invitation.mediawiki:http://www.open-bio.org/wiki/BOSC_2006
BOSC_2007_ISMB_Attendees_OBF.mediawiki:*** Online Documentation Sites http://www.open-bio.org/wiki/Projects
EU-Codefest_2014.mediawiki:The EU Codefest share the same [http://www.open-bio.org/wiki/Codefest_2014#Goals goals] as the OBF Codefest, which is usually organized along with the [[BOSC]].
Google_Summer_of_Code_2010_Org_Application.mediawiki:We have a list of information that every student must include with their application.  Pasted from http://www.open-bio.org/wiki/Google_Summer_of_Code#When_you_apply:
Google_Summer_of_Code_2011_Org_Application.mediawiki:We have a list of information that every student must include with their application.  Pasted from http://www.open-bio.org/wiki/Google_Summer_of_Code#When_you_apply:
Google_Summer_of_Code.mediawiki::* [http://www.open-bio.org/wiki/Google_Summer_of_Code_2015_Ideas#Biocaml Project ideas]
Google_Summer_of_Code.mediawiki:* [http://www.open-bio.org/wiki/Google_Summer_of_Code_2014#Loris_Cro vcf-mongo ]: Gene2Farm and WHEALBI European Research projects
Minutes_2014_Nov_ConfCall.mediawiki:As posted on http://www.open-bio.org/wiki/Minutes:2013_Dec_ConfCall

[peterjc]

It appears anchors are/were not an out of the box option with Jekyll on GitHub Pages, thus solutions like https://github.com/allejo/jekyll-anchor-headings which looks fairly simple...