Error loading vcf with some SV types

[cboursnell]

I have a GRIDSS vcf that I have updated the svtype field (which was all BND to start with) to be taken from the output of Clove. So these are BND, DEL, INV, TAN, TRA.
When I try to load this vcf into R and get the breakpointRanges I get an error.
My R is:

vcf <- readVcf(input, "hg38")
gr <- breakpointRanges(vcf)

and the error is

Error in names(cgr)[is.na(end), ] : incorrect number of dimensions

Update: I have tried just changing the deletion events from BND to DEL and this gives the same error. I can provide a minimal reproducible example if needed.

[d-cameron]

Yes, please provide a minimal reproduction VCF with just one or two of the offending records.