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Clear and consistent naming #19

@baogorek

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@baogorek

Perhaps we could use this issue to solidify the names of all the major concepts.

  • I think loss_matrix calibration.py and reweight.py should actually be called something like metrics_matrix.
  • noise_level is about changing the starting value, so maybe something like perturbation_log_sd

That's all I have right now.

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