From 93dc5c4e0f1708e90d90ea50a91f6242c3848e22 Mon Sep 17 00:00:00 2001 From: MaybeRichard Date: Thu, 9 Jan 2025 17:27:58 +0800 Subject: [PATCH 1/3] Update docstring about cross validation fold usage Signed-off-by: MaybeRichard --- generation/maisi/maisi_train_controlnet_tutorial.ipynb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/generation/maisi/maisi_train_controlnet_tutorial.ipynb b/generation/maisi/maisi_train_controlnet_tutorial.ipynb index 37becc2e4..3ac4de95a 100644 --- a/generation/maisi/maisi_train_controlnet_tutorial.ipynb +++ b/generation/maisi/maisi_train_controlnet_tutorial.ipynb @@ -166,7 +166,7 @@ " \"image\": \"tr_image_001_emb.nii.gz\", # relative path to the image embedding file\n", " # relative path to the combined label (pseudo whole-body segmentation mask + ROI mask) file\n", " \"label\": \"tr_label_001.nii.gz\",\n", - " \"fold\": 0, # fold index for cross validation, fold 0 is used for training\n", + " \"fold\": 0, # fold index for cross validation. If the dataset item's fold value is equal to the fold value in config_maisi_controlnet_train.json, then it is used for validation. Otherwise, it is used for training. In the current parameters, fold 0 is for validation and fold 1 is for training.\n", " \"dim\": sim_dim, # the dimension of image\n", " \"spacing\": [1.5, 1.5, 1.5], # the spacing of image\n", " \"top_region_index\": [0, 1, 0, 0], # the top region index of the image\n", From 44c249c46c84aae439cbef28701bc2d4fe80f4bb Mon Sep 17 00:00:00 2001 From: MaybeRichard Date: Wed, 9 Apr 2025 09:32:11 +0800 Subject: [PATCH 2/3] update error explanation in parameters fold --- generation/maisi/maisi_train_controlnet_tutorial.ipynb | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/generation/maisi/maisi_train_controlnet_tutorial.ipynb b/generation/maisi/maisi_train_controlnet_tutorial.ipynb index 6177db189..f9f926006 100644 --- a/generation/maisi/maisi_train_controlnet_tutorial.ipynb +++ b/generation/maisi/maisi_train_controlnet_tutorial.ipynb @@ -189,7 +189,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "id": "fc32a7fe", "metadata": {}, "outputs": [], @@ -201,7 +201,9 @@ " \"image\": \"tr_image_001_emb.nii.gz\", # relative path to the image embedding file\n", " # relative path to the combined label (pseudo whole-body segmentation mask + ROI mask) file\n", " \"label\": \"tr_label_001.nii.gz\",\n", - " \"fold\": 0, # fold index for cross validation. If the dataset item's fold value is equal to the fold value in config_maisi_controlnet_train.json, then it is used for validation. Otherwise, it is used for training. In the current parameters, fold 0 is for validation and fold 1 is for training.\n", + " \"fold\": 0, # fold index for cross validation. If the dataset item's fold value is equal to the fold value\n", + " # in config_maisi_controlnet_train.json, then it is used for validation. Otherwise, \n", + " # it is used for training. In the current parameters, fold 0 is for validation.\n", " \"dim\": sim_dim, # the dimension of image\n", " \"spacing\": [1.5, 1.5, 1.5], # the spacing of image\n", " },\n", From cd2a8bfe66a5a3d2b6246fab263f5eb6ecb54dae Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Wed, 9 Apr 2025 01:33:33 +0000 Subject: [PATCH 3/3] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- generation/maisi/maisi_train_controlnet_tutorial.ipynb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/generation/maisi/maisi_train_controlnet_tutorial.ipynb b/generation/maisi/maisi_train_controlnet_tutorial.ipynb index f9f926006..bec127c55 100644 --- a/generation/maisi/maisi_train_controlnet_tutorial.ipynb +++ b/generation/maisi/maisi_train_controlnet_tutorial.ipynb @@ -202,7 +202,7 @@ " # relative path to the combined label (pseudo whole-body segmentation mask + ROI mask) file\n", " \"label\": \"tr_label_001.nii.gz\",\n", " \"fold\": 0, # fold index for cross validation. If the dataset item's fold value is equal to the fold value\n", - " # in config_maisi_controlnet_train.json, then it is used for validation. Otherwise, \n", + " # in config_maisi_controlnet_train.json, then it is used for validation. Otherwise,\n", " # it is used for training. In the current parameters, fold 0 is for validation.\n", " \"dim\": sim_dim, # the dimension of image\n", " \"spacing\": [1.5, 1.5, 1.5], # the spacing of image\n",