Run Unit Tests

Updates API and tests with recently added input and output objects #394

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Run time

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Job	Run time
run_ruff / ruff	5s
test (ubuntu-latest, 3.9)	3m 7s
test (ubuntu-latest, 3.13)	3m 23s
test (windows-latest, 3.9)	3m 33s
test (windows-latest, 3.13)	3m 52s
test (macos-13, 3.9)	5m 52s
test (macos-13, 3.13)	6m 13s
	26m 5s