- Filter visualization by cluster size designated by user (i.e. clusters of 3+ / 4+ proteins) - ~~Refactor code to use existing dependencies~~ - ~~Make it clear that the visualization was generated (rather than having to click the visualization tab after)~~ - ~~Edges table - Removing non-highlighted rows~~ - ~~Making nodes table collapsable~~ - Group comparison data table - Keep the full table in the backend - ~~Add toggle / selector to use cytoscape desktop or shinyJS for visualization. Disable cytoscape desktop button in prod.~~ - Linking the new step to the pipeline (integrating step 5 to steps 3 and 4) - MSstatsBioNet + MSstatsShiny: Refactor node (log2FC, Protein) and edge (interaction) column names - Add unit tests in MSstatsBioNet for subnetwork query. - Replace evidenceLink with https://discovery.indra.bio/search/ - Highlight node when clicking on node table - Save as HTML file iteratively with specified settings
