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Refactor logging across projects to make consistent #1

@JonathanMace

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@JonathanMace

Currently using a mix of sysout and log4j, with log4j configured in no consistent way. The result is that some people don't see expected output when they follow simple tutorial steps, because, for example, they have a log4j.properties somewhere on their classpath that is messing with the intended config.

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