Uncompressing files

[buckleyrm]

https://github.com/ReubenBuck/github-lewis/blob/efefc0516bee16a96a7e1462888532f6540e7ac5/map_libraries.slurm.sh#L196

Do these files need really need to be uncompressed?

Is bma mem able to handle uBAMs?

This could save significant time.