% of mtDNA reads of the total sequence reads that mapped to the whole mtDNA in MITObim, read pairs or reads

Hi Christoph,

Does MITObim subsample the input reads and how to get most of the input reads?

Is this read pairs or individual reads? "readpool contains 353396 reads" -see log file below.


[mitobim_375_trimmed data.log](https://github.com/chrishah/MITObim/files/14228798/mitobim_375_trimmed.data.log)

Thanks,
Ali