Bed and bigBed analysis after the mapping.

[ypriverol]

Here I would like to collect a set of interesting questions for data mining of the final mappings:

• % of coverage of the genome by chromosomes for each Species.
• % of coverage Transcripts coverage and most predominant transcript by the gene for each species.
• % percentage of genes/transcript coverage by unique peptides.
• % Peptides that do not map to any coordinates.

[cschlaffner]

• number of exons covered
• number of splice junctions
• number of alternative splice junctions covered by peptides
• % of exon coverage