data_format #1
Description
Hi,
thx for the code, How can I detect the suitable data_format?
Also, is CZI format available?
Best
Parsa
/home/parsa/PycharmProjects/DeepProjection/.venv/lib/python3.10/site-packages/deepprojection/postprocess.py:9: UserWarning: 'has_cuda' is deprecated, please use 'torch.backends.cuda.is_built()'
if torch.has_cuda:
/home/parsa/PycharmProjects/DeepProjection/.venv/lib/python3.10/site-packages/deepprojection/predict.py:5: UserWarning: 'has_cuda' is deprecated, please use 'torch.backends.cuda.is_built()'
if torch.has_cuda:
/home/parsa/PycharmProjects/DeepProjection/.venv/lib/python3.10/site-packages/deepprojection/train.py:11: UserWarning: 'has_cuda' is deprecated, please use 'torch.backends.cuda.is_built()'
if torch.has_cuda:
Traceback (most recent call last):
File "/home/parsa/PycharmProjects/DeepProjection/main.py", line 6, in
predict = dp.Project(filename, data_format='T-Z-XY', weights=path_weights, mode='mip',
File "/home/parsa/PycharmProjects/DeepProjection/.venv/lib/python3.10/site-packages/deepprojection/project.py", line 88, in init
n_frames, n_slices, n_pixel = convert_to_hyperstack(self.input, self.temp_file, data_format=data_format,
File "/home/parsa/PycharmProjects/DeepProjection/.venv/lib/python3.10/site-packages/deepprojection/utils.py", line 66, in convert_to_hyperstack
raise ValueError(f'Chosen data_format {data_format} not valid')
ValueError: Chosen data_format T-Z-XY not valid