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Error when deploying app with SVGAnnotation on shinyapps.io #4

@debsush

Description

@debsush

Sir,

Your package rocks and works brilliantly when I use it in my app. However, when I try to deploy it on shinyapps.io, it throws errors. I had also raised the point in Shiny forum but they could not fix it at their end and wanted me to reach out to you. My entire app hinges on my ability to deploy the app which depends on your package.
Was wondering if this can be fixed in any way

Shiny Discussion: https://groups.google.com/forum/#!searchin/shiny-discuss/sushanta/shiny-discuss/fn2rbVol9Uo/9qWhv6zQCQAJ

Error when Deploying:

Preparing to deploy application...DONE
Uploading bundle for application: 85676...DONE
Deploying bundle: 383967 for application: 85676 ...
Waiting for task: 159655740
building: Parsing manifest
building: Building image: 377505
building: Installing system dependencies
building: Fetching packages
building: Building package: SVGAnnotation

########################## Begin Task Log

[2016-03-01T02:25:17.450725860+0000] Execute script: packages/build/RODBC.sh

  • set -e
  • apt-get -qq update
  • apt-get -qq -y --force-yes install tdsodbc freetds-bin freetds-common freetds-dev
    debconf: delaying package configuration, since apt-utils is not installed
    Selecting previously unselected package libct4.
    (Reading database ... 84227 files and directories currently installed.)
    Unpacking libct4 (from .../libct4_0.91-1_amd64.deb) ...
    Selecting previously unselected package libsybdb5.
    Unpacking libsybdb5 (from .../libsybdb5_0.91-1_amd64.deb) ...
    Selecting previously unselected package freetds-bin.
    Unpacking freetds-bin (from .../freetds-bin_0.91-1_amd64.deb) ...
    Selecting previously unselected package freetds-dev.
    Unpacking freetds-dev (from .../freetds-dev_0.91-1_amd64.deb) ...
    Processing triggers for man-db ...
    Setting up libct4 (0.91-1) ...
    Setting up libsybdb5 (0.91-1) ...
    Setting up freetds-bin (0.91-1) ...
    Setting up freetds-dev (0.91-1) ...
    Processing triggers for libc-bin ...
    ldconfig deferred processing now taking place
  • apt-get -qq -y --force-yes install odbc-postgresql
  • cat
    [2016-03-01T02:25:39.298946421+0000] Installing R package: stringi (1.0-1)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘stringi’ ...
  • DONE (stringi)
    [2016-03-01T02:25:41.776748703+0000] Installing R package: gss (2.1-5)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘gss’ ...
  • DONE (gss)
    [2016-03-01T02:25:42.088985956+0000] Installing R package: registry (0.3)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘registry’ ...
  • DONE (registry)
    [2016-03-01T02:25:42.349713468+0000] Installing R package: iterators (1.0.8)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘iterators’ ...
  • DONE (iterators)
    [2016-03-01T02:25:42.637038596+0000] Installing R package: assertthat (0.1)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘assertthat’ ...
  • DONE (assertthat)
    [2016-03-01T02:25:42.881799931+0000] Installing R package: proto (0.3-10)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘proto’ ...
  • DONE (proto)
    [2016-03-01T02:25:43.160651874+0000] Installing R package: qap (0.1-0)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘qap’ ...
  • DONE (qap)
    [2016-03-01T02:25:43.758738243+0000] Installing R package: Rttf2pt1 (1.3.3)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘Rttf2pt1’ ...
  • DONE (Rttf2pt1)
    [2016-03-01T02:25:44.029514226+0000] Installing R package: Rcpp (0.12.3)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘Rcpp’ ...
  • DONE (Rcpp)
    [2016-03-01T02:25:45.290160840+0000] Installing R package: plyr (1.8.3)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘plyr’ ...
  • DONE (plyr)
    [2016-03-01T02:25:45.598502926+0000] Installing R package: reshape (0.8.5)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘reshape’ ...
  • DONE (reshape)
    [2016-03-01T02:25:45.857847060+0000] Installing R package: cluster (2.0.3)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘cluster’ ...
  • DONE (cluster)
    [2016-03-01T02:25:46.163270227+0000] Installing R package: gclus (1.3.1)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘gclus’ ...
  • DONE (gclus)
    [2016-03-01T02:25:46.418752988+0000] Installing R package: whisker (0.3-2)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘whisker’ ...
  • DONE (whisker)
    [2016-03-01T02:25:46.687252632+0000] Installing R package: xtable (1.8-2)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘xtable’ ...
  • DONE (xtable)
    [2016-03-01T02:25:46.984196326+0000] Installing R package: magrittr (1.5)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘magrittr’ ...
  • DONE (magrittr)
    [2016-03-01T02:25:47.243193359+0000] Installing R package: stringr (1.0.0)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘stringr’ ...
  • DONE (stringr)
    [2016-03-01T02:25:47.495429053+0000] Installing R package: colorspace (1.2-6)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘colorspace’ ...
  • DONE (colorspace)
    [2016-03-01T02:25:47.778991617+0000] Installing R package: stabledist (0.7-0)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘stabledist’ ...
  • DONE (stabledist)
    [2016-03-01T02:25:48.027906627+0000] Installing R package: rpnf (1.0.4)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘rpnf’ ...
  • DONE (rpnf)
    [2016-03-01T02:25:48.281091791+0000] Installing R package: XML (3.98-1.3)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘XML’ ...
  • DONE (XML)
    [2016-03-01T02:25:49.006109150+0000] Installing R package: selectr (0.2-3)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘selectr’ ...
  • DONE (selectr)
    [2016-03-01T02:25:49.261767417+0000] Installing R package: munsell (0.4.3)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘munsell’ ...
  • DONE (munsell)
    [2016-03-01T02:25:49.521882610+0000] Installing R package: MASS (7.3-45)
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing binary package ‘MASS’ ...
  • DONE (MASS)
    [2016-03-01T02:25:49.860697058+0000] Building R package: SVGAnnotation (0.93-2)
    /mnt/packages/build /mnt
    Warning in untar2(tarfile, files, list, exdir, restore_times) :
    skipping pax global extended headers
  • installing to library ‘/usr/local/lib/R/site-library’
  • installing source package ‘SVGAnnotation’ ...

    q(status = capabilities()["cairo"] == FALSE)
    ***** Using R's own built-in svg() function (rather than the Cairo package).
    checking for pkg-config... /usr/bin/pkg-config
    configure: creating ./config.status
    config.status: creating DESCRIPTION
    config.status: creating R/config.R
    ** R
    ** data
    ** inst
    ** preparing package for lazy loading
    in method for ‘genEdgeIds’ with signature ‘"Ragraph"’: no definition for class “Ragraph”
    in method for ‘genEdgeIds’ with signature ‘"graphNEL"’: no definition for class “graphNEL”
    Creating a generic function from function ‘getEdgeInfo’ in package ‘SVGAnnotation’
    in method for ‘getEdgeInfo’ with signature ‘"graphNEL"’: no definition for class “graphNEL”
    ** help
    *** installing help indices
    ** building package indices
    ** testing if installed package can be loaded

  • creating tarball
    packaged installation of ‘SVGAnnotation’ as ‘SVGAnnotation_0.93-1_R_x86_64-pc-linux-gnu.tar.gz’
  • DONE (SVGAnnotation)
    /mnt
    ################################# End Task Log #################################
    Error: Unhandled Exception: Child Task 159655762 error: Unhandled Exception: File does not exist: /opt/rstudio-lucid/work/lucid-builder/build/images/task-159655762-NGol6Z/packages/build/SVGAnnotation_0.93-2_R_x86_64-pc-linux-gnu.tar.gz

Please help me.

Thank you
SD

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