Indexing fractures outside domain

[aksitchler]

When I set domainSizeIncrease to something greater than zero I get the following error:

--> Gathering points on fractures
Traceback (most recent call last):
File "/Users/alexissitchler/software/dfnWorks/examples/chem_lognormal/driver.py", line 80, in
DFN.map_to_continuum(l=1.5, orl=3)
File "/Users/alexissitchler/Library/Python/3.9/lib/python/site-packages/pydfnworks/dfnGen/meshing/udfm/map2continuum.py", line 92, in map_to_continuum
points = self.gather_points()
File "/Users/alexissitchler/Library/Python/3.9/lib/python/site-packages/pydfnworks/dfnGen/meshing/udfm/map2continuum_helper.py", line 73, in gather_points
point = self.polygons[name][j]
IndexError: index 5 is out of bounds for axis 0 with size 5
--> output_chem_lognormal completed/exited

[hymanjd]

Can you also post your whole input card?

[aksitchler]

#"""

:synopsis: Driver run file for TPL example

:version: 2.0

:maintainer: Jeffrey Hyman

#.. moduleauthor:: Jeffrey Hyman jhyman@lanl.gov
#"""

from pydfnworks import *
import os

src_path = os.getcwd()
jobname = src_path + "/output_chem_lognormal"
dfnFlow_file = src_path + '/chem_lognormal.in'

DFN = DFNWORKS(jobname,
dfnFlow_file=dfnFlow_file,
flow_solver="PFLOTRAN",
ncpu=8)

DFN.params['domainSize']['value'] = [5, 5, 5]
DFN.params['h']['value'] = 0.15
DFN.params['stopCondition']['value'] = 0
DFN.params['nPoly']['value'] = 25
DFN.params['outputFinalRadiiPerFamily']['value'] = True
DFN.params['outputAcceptedRadiiPerFamily']['value'] = True
DFN.params['forceLargeFractures']['value'] = True
DFN.params['domainSizeIncrease']['value'] = [1, 1, 1]
DFN.params['ignoreBoundaryFaces']['value'] = False
DFN.params['boundaryFaces']['value'] = [0, 0, 0, 0, 1, 1]
DFN.params['rejectsPerFracture']['value'] = 350
DFN.params['visualizationMode']['value'] = True

DFN.add_fracture_family(shape="rect",
distribution="log_normal",
kappa=25.78,
probability=.5,
aspect=1.0,
beta_distribution=1,
beta=0.0,
theta=95.47,
phi=23.32,
log_mean=0.5,
log_std=.06,
min_radius=0.5,
max_radius=5.0,
hy_variable="permeability",
hy_function="correlated",
hy_params={
"alpha": 1e-7,
"beta": 2
})

DFN.add_fracture_family(shape="rect",
distribution="log_normal",
kappa=32.0,
probability=.5,
aspect=1.0,
beta_distribution=1,
beta=0.0,
theta=1.42,
phi=26.81,
log_mean=0.3,
log_std=.06,
min_radius=0.5,
max_radius=5.0,
hy_variable="permeability",
hy_function="correlated",
hy_params={
"alpha": 1e-7,
"beta": 2
})

DFN.make_working_directory(delete=True)
DFN.check_input()

define_paths()

DFN.create_network()
#DFN.output_report()
DFN.mesh_network()

DFN.map_to_continuum(l=1.5, orl=3)
DFN.upscale(mat_perm=1e-17, mat_por=0.01)

DFN.zone2ex(zone_file='all')
DFN.material_ids = np.genfromtxt('tag_frac.dat').astype(int)

[hymanjd]

Was able to reproduce error. Thanks! From: aksitchler ***@***.***> Reply-To: lanl/dfnWorks ***@***.***> Date: Thursday, December 19, 2024 at 3:52 PM To: lanl/dfnWorks ***@***.***> Cc: Jeffrey Hyman ***@***.***>, Comment ***@***.***> Subject: [EXTERNAL] Re: [lanl/dfnWorks] Indexing fractures outside domain (Issue #97) #""" :synopsis: Driver run file for TPL example :version: 2.0 :maintainer: Jeffrey Hyman #.. moduleauthor:: Jeffrey Hyman ***@***.******@***.***> #""" from pydfnworks import * import os src_path = os.getcwd() jobname = src_path + "/output_chem_lognormal" dfnFlow_file = src_path + '/chem_lognormal.in<https://urldefense.com/v3/__http:/chem_lognormal.in__;!!Bt8fGhp8LhKGRg!F63fHS83ylc1HwchkfaWbr_TShCUB-E6c9u17H5d1Sjvzzx6b5FWg0QsDrrYoCsS1SwJL3Au7k0eDpugOAMoKM5Z$>' DFN = DFNWORKS(jobname, dfnFlow_file=dfnFlow_file, flow_solver="PFLOTRAN", ncpu=8) DFN.params['domainSize']['value'] = [5, 5, 5] DFN.params['h']['value'] = 0.15 DFN.params['stopCondition']['value'] = 0 DFN.params['nPoly']['value'] = 25 DFN.params['outputFinalRadiiPerFamily']['value'] = True DFN.params['outputAcceptedRadiiPerFamily']['value'] = True DFN.params['forceLargeFractures']['value'] = True DFN.params['domainSizeIncrease']['value'] = [1, 1, 1] DFN.params['ignoreBoundaryFaces']['value'] = False DFN.params['boundaryFaces']['value'] = [0, 0, 0, 0, 1, 1] DFN.params['rejectsPerFracture']['value'] = 350 DFN.params['visualizationMode']['value'] = True DFN.add_fracture_family(shape="rect", distribution="log_normal", kappa=25.78, probability=.5, aspect=1.0, beta_distribution=1, beta=0.0, theta=95.47, phi=23.32, log_mean=0.5, log_std=.06, min_radius=0.5, max_radius=5.0, hy_variable="permeability", hy_function="correlated", hy_params={ "alpha": 1e-7, "beta": 2 }) DFN.add_fracture_family(shape="rect", distribution="log_normal", kappa=32.0, probability=.5, aspect=1.0, beta_distribution=1, beta=0.0, theta=1.42, phi=26.81, log_mean=0.3, log_std=.06, min_radius=0.5, max_radius=5.0, hy_variable="permeability", hy_function="correlated", hy_params={ "alpha": 1e-7, "beta": 2 }) DFN.make_working_directory(delete=True) DFN.check_input() define_paths() DFN.create_network() #DFN.output_report() DFN.mesh_network() DFN.map_to_continuum(l=1.5, orl=3) DFN.upscale(mat_perm=1e-17, mat_por=0.01) DFN.zone2ex(zone_file='all') DFN.material_ids = np.genfromtxt('tag_frac.dat').astype(int) — Reply to this email directly, view it on GitHub<https://urldefense.com/v3/__https:/github.com/lanl/dfnWorks/issues/97*issuecomment-2555910162__;Iw!!Bt8fGhp8LhKGRg!F63fHS83ylc1HwchkfaWbr_TShCUB-E6c9u17H5d1Sjvzzx6b5FWg0QsDrrYoCsS1SwJL3Au7k0eDpugONj4s8Tb$>, or unsubscribe<https://urldefense.com/v3/__https:/github.com/notifications/unsubscribe-auth/AEKOGDFMHCRNVOAHQ3QS2RL2GNEY5AVCNFSM6AAAAABT562UXCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDKNJVHEYTAMJWGI__;!!Bt8fGhp8LhKGRg!F63fHS83ylc1HwchkfaWbr_TShCUB-E6c9u17H5d1Sjvzzx6b5FWg0QsDrrYoCsS1SwJL3Au7k0eDpugOOFP0Qri$>. You are receiving this because you commented.Message ID: ***@***.***>