Pin or update PyHMMER to `v0.12.0`

[althonos]

Hi @nextgenusfs !

Hope you're having a good time using PyHMMER 😄 I just released PyHMMER 0.12.0 and among other things it does break some of the code by changing some attributes, properties and function returns to str instead of bytes (bye bye decode/encode). Since you didn't pin the maximum version of PyHMMER your code will break with fresh installs. You could either:

• Pin the maximum supported version in pyproject.toml, e.g.:

  dependencies = [
       #  ...
       "pyhmmer>=0.10.15,<0.12.0",
  ]

• Update the code to remove explicit decode and encode such as

  funannotate2/funannotate2/search.py

  Line 74 in 20b0286

  "id": hit.name.decode(),

  which would become:

  "id": hit.name,

  since now hit.name is a str and not a bytes anymore, and then update the mimum supported version:

  dependencies = [
       #  ...
       "pyhmmer>=0.12.0",
  ]

Cheers!

[nextgenusfs]

Thanks a lot for the heads up, appreciate it.