From e832aeaf7ddf43fbb53190232154dcb674e067d3 Mon Sep 17 00:00:00 2001 From: Lukas Heumos Date: Wed, 17 Dec 2025 19:09:53 +0100 Subject: [PATCH 1/4] add more core packages icons Signed-off-by: Lukas Heumos --- content/design/_index.md | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/content/design/_index.md b/content/design/_index.md index b02c7f4..08aaf46 100644 --- a/content/design/_index.md +++ b/content/design/_index.md @@ -146,4 +146,31 @@ Our primary logo combines our icon with the full name. Use this version when int [[packageicons.links]] text = "Download SVG" url = "../img/icons/scvi-tools.svg" + +[[packageicons]] + name = "pertpy" + description = "pertpy package icon" + img = "../img/icons/pertpy.svg" + details = "Icon for the pertpy package, representing a perturbation analysis framework for single-cell omics data." + [[packageicons.links]] + text = "Download SVG" + url = "../img/icons/pertpy.svg" + +[[packageicons]] + name = "rapids-singlecell" + description = "rapids-singlecell package icon" + img = "../img/icons/rapids-singlecell.svg" + details = "Icon for the pertpy package, representing a GPU accelerated framework for single-cell omics data." + [[packageicons.links]] + text = "Download SVG" + url = "../img/icons/rapids-singlecell.svg" + +[[packageicons]] + name = "decoupler" + description = "decoupler package icon" + img = "../img/icons/decoupler.svg" + details = "Icon for the decoupler package, representing a pathway enrichment framework for single-cell omics data." + [[packageicons.links]] + text = "Download SVG" + url = "../img/icons/decoupler.svg" +++ From 6f5c391a082ee39f367b8ee29916dc7683c9ebea Mon Sep 17 00:00:00 2001 From: Lukas Heumos Date: Wed, 17 Dec 2025 19:18:40 +0100 Subject: [PATCH 2/4] improve descriptions Signed-off-by: Lukas Heumos --- content/design/_index.md | 22 +++++++++++----------- 1 file changed, 11 insertions(+), 11 deletions(-) diff --git a/content/design/_index.md b/content/design/_index.md index 08aaf46..81f02d2 100644 --- a/content/design/_index.md +++ b/content/design/_index.md @@ -66,7 +66,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "anndata" description = "AnnData package icon" img = "../img/libs/anndata_schema.svg" - details = "Icon for the AnnData package, representing annotated matrices." + details = "Annotated multivariate observation data." color = true [[packageicons.links]] text = "Download SVG" @@ -76,7 +76,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "mudata" description = "MuData package icon" img = "../img/libs/mudata_flat.svg" - details = "Icon for the MuData package, representing multimodal data format." + details = "Multimodal annotated data." color = true [[packageicons.links]] text = "Download SVG" @@ -89,7 +89,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "spatialdata" description = "SpatialData package icon" img = "../img/icons/spatialdata.svg" - details = "Icon for the SpatialData package, representing data format for spatial resolution data." + details = "Spatially resolved omics data." color = true [[packageicons.links]] text = "Download SVG" @@ -102,7 +102,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "scanpy" description = "Scanpy package icon" img = "../img/icons/scanpy.svg" - details = "Icon for the Scanpy package, representing single-cell analysis framework." + details = "Single-cell analysis in Python." color = true [[packageicons.links]] text = "Download SVG" @@ -112,7 +112,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "muon" description = "Muon package icon" img = "../img/icons/muon.svg" - details = "Icon for the Muon package, representing multi-omics analysis framework." + details = "Multi-omics analysis framework." [[packageicons.links]] text = "Download SVG" url = "../img/icons/muon.svg" @@ -121,7 +121,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "scirpy" description = "Scirpy package icon" img = "../img/icons/scirpy.svg" - details = "Icon for the Scirpy package, representing single-cell immune sequencing framework." + details = "Single-cell immune receptor sequencing analysis." [[packageicons.links]] text = "Download SVG" url = "../img/icons/scirpy.svg" @@ -133,7 +133,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "squidpy" description = "Squidpy package icon" img = "../img/icons/squidpy.svg" - details = "Icon for the Squidpy package, representing spatial single cell analysis." + details = "Spatial single-cell analysis." [[packageicons.links]] text = "Download SVG" url = "../img/icons/squidpy.svg" @@ -142,7 +142,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "scvi-tools" description = "scvi-tools package icon" img = "../img/icons/scvi-tools.svg" - details = "Icon for the scvi-tools package, representing probabilistic modelling framework for single-cell omics data." + details = "Probabilistic models for single-cell omics." [[packageicons.links]] text = "Download SVG" url = "../img/icons/scvi-tools.svg" @@ -151,7 +151,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "pertpy" description = "pertpy package icon" img = "../img/icons/pertpy.svg" - details = "Icon for the pertpy package, representing a perturbation analysis framework for single-cell omics data." + details = "Perturbation analysis for single-cell data." [[packageicons.links]] text = "Download SVG" url = "../img/icons/pertpy.svg" @@ -160,7 +160,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "rapids-singlecell" description = "rapids-singlecell package icon" img = "../img/icons/rapids-singlecell.svg" - details = "Icon for the pertpy package, representing a GPU accelerated framework for single-cell omics data." + details = "GPU-accelerated single-cell analysis." [[packageicons.links]] text = "Download SVG" url = "../img/icons/rapids-singlecell.svg" @@ -169,7 +169,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "decoupler" description = "decoupler package icon" img = "../img/icons/decoupler.svg" - details = "Icon for the decoupler package, representing a pathway enrichment framework for single-cell omics data." + details = "Pathway and transcription factor activity inference." [[packageicons.links]] text = "Download SVG" url = "../img/icons/decoupler.svg" From 6dadaab370d9201936573bbddb41fecabeafdb48 Mon Sep 17 00:00:00 2001 From: Lukas Heumos Date: Wed, 17 Dec 2025 19:51:24 +0100 Subject: [PATCH 3/4] fix url Signed-off-by: Lukas Heumos --- layouts/packages/list.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/layouts/packages/list.html b/layouts/packages/list.html index a773d3d..d0ea471 100644 --- a/layouts/packages/list.html +++ b/layouts/packages/list.html @@ -74,7 +74,7 @@

Frameworks

{{ end }} - {{ $jsonURL := "https://scverse.org/ecosystem-packages/ecosystem.json" }} + {{ $jsonURL := "https://scverse.org/ecosystem-packages/packages.json" }} {{ $remoteData := resources.GetRemote $jsonURL }} {{ $pkgs := transform.Unmarshal $remoteData.Content }}

Ecosystem packages maintained by scverse community

From 754d45361f5bb1b32e9036af01ccc06ada7dedc7 Mon Sep 17 00:00:00 2001 From: Lukas Heumos Date: Wed, 17 Dec 2025 20:00:38 +0100 Subject: [PATCH 4/4] wording Signed-off-by: Lukas Heumos --- content/design/_index.md | 22 +++++++++++----------- 1 file changed, 11 insertions(+), 11 deletions(-) diff --git a/content/design/_index.md b/content/design/_index.md index 81f02d2..67b2593 100644 --- a/content/design/_index.md +++ b/content/design/_index.md @@ -66,7 +66,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "anndata" description = "AnnData package icon" img = "../img/libs/anndata_schema.svg" - details = "Annotated multivariate observation data." + details = "Icon for the AnnData package, annotated multivariate observation data." color = true [[packageicons.links]] text = "Download SVG" @@ -76,7 +76,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "mudata" description = "MuData package icon" img = "../img/libs/mudata_flat.svg" - details = "Multimodal annotated data." + details = "Icon for the MuData package, multimodal annotated data." color = true [[packageicons.links]] text = "Download SVG" @@ -89,7 +89,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "spatialdata" description = "SpatialData package icon" img = "../img/icons/spatialdata.svg" - details = "Spatially resolved omics data." + details = "Icon for the SpatialData package, spatially resolved omics data." color = true [[packageicons.links]] text = "Download SVG" @@ -102,7 +102,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "scanpy" description = "Scanpy package icon" img = "../img/icons/scanpy.svg" - details = "Single-cell analysis in Python." + details = "Icon for the Scanpy package, single-cell analysis in Python." color = true [[packageicons.links]] text = "Download SVG" @@ -112,7 +112,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "muon" description = "Muon package icon" img = "../img/icons/muon.svg" - details = "Multi-omics analysis framework." + details = "Icon for the Muon package, multi-omics analysis framework." [[packageicons.links]] text = "Download SVG" url = "../img/icons/muon.svg" @@ -121,7 +121,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "scirpy" description = "Scirpy package icon" img = "../img/icons/scirpy.svg" - details = "Single-cell immune receptor sequencing analysis." + details = "Icon for the Scirpy package, single-cell immune receptor sequencing analysis." [[packageicons.links]] text = "Download SVG" url = "../img/icons/scirpy.svg" @@ -133,7 +133,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "squidpy" description = "Squidpy package icon" img = "../img/icons/squidpy.svg" - details = "Spatial single-cell analysis." + details = "Icon for the Squidpy package, spatial single-cell analysis." [[packageicons.links]] text = "Download SVG" url = "../img/icons/squidpy.svg" @@ -142,7 +142,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "scvi-tools" description = "scvi-tools package icon" img = "../img/icons/scvi-tools.svg" - details = "Probabilistic models for single-cell omics." + details = "Icon for the scvi-tools package, probabilistic models for single-cell omics." [[packageicons.links]] text = "Download SVG" url = "../img/icons/scvi-tools.svg" @@ -151,7 +151,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "pertpy" description = "pertpy package icon" img = "../img/icons/pertpy.svg" - details = "Perturbation analysis for single-cell data." + details = "Icon for the pertpy package, perturbation analysis for single-cell data." [[packageicons.links]] text = "Download SVG" url = "../img/icons/pertpy.svg" @@ -160,7 +160,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "rapids-singlecell" description = "rapids-singlecell package icon" img = "../img/icons/rapids-singlecell.svg" - details = "GPU-accelerated single-cell analysis." + details = "Icon for the rapids-singlecell package, GPU-accelerated single-cell analysis." [[packageicons.links]] text = "Download SVG" url = "../img/icons/rapids-singlecell.svg" @@ -169,7 +169,7 @@ Our primary logo combines our icon with the full name. Use this version when int name = "decoupler" description = "decoupler package icon" img = "../img/icons/decoupler.svg" - details = "Pathway and transcription factor activity inference." + details = "Icon for the decoupler package, pathway and transcription factor activity inference." [[packageicons.links]] text = "Download SVG" url = "../img/icons/decoupler.svg"