diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index c1f03c0..881021d 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -20,6 +20,5 @@ jobs: name: Python Unit Test with Postgres uses: uc-cdis/.github/.github/workflows/python_unit_test.yaml@master with: - test-script: 'test/ci_commands_script.sh' - python-version: '3.9' + python-version: '3.13' use-cache: true diff --git a/.github/workflows/pypi.yml b/.github/workflows/pypi.yml index 3a27e84..917cf67 100644 --- a/.github/workflows/pypi.yml +++ b/.github/workflows/pypi.yml @@ -8,9 +8,9 @@ jobs: name: PyPI Poetry Publish uses: uc-cdis/.github/.github/workflows/python_package_index_publish.yaml@master with: - PYTHON_VERSION: '3.9' + PYTHON_VERSION: '3.13' # This will attempt push to test PyPI first and only push to prod if it works DO_TEST_PUBLISH_FIRST: true secrets: PYPI_TEST_API_TOKEN: ${{ secrets.PYPI_TEST_API_TOKEN }} - PYPI_PROD_API_TOKEN: ${{ secrets.PYPI_PROD_API_TOKEN }} \ No newline at end of file + PYPI_PROD_API_TOKEN: ${{ secrets.PYPI_PROD_API_TOKEN }} diff --git a/.secrets.baseline b/.secrets.baseline index 35ffdab..cb16ab1 100644 --- a/.secrets.baseline +++ b/.secrets.baseline @@ -1,11 +1,11 @@ { - "generated_at": "2021-07-02T16:04:40Z", + "version": "1.5.0", "plugins_used": [ { - "name": "AWSKeyDetector" + "name": "ArtifactoryDetector" }, { - "name": "ArtifactoryDetector" + "name": "AWSKeyDetector" }, { "name": "Base64HighEntropyString", @@ -31,8 +31,8 @@ "name": "JwtTokenDetector" }, { - "keyword_exclude": null, - "name": "KeywordDetector" + "name": "KeywordDetector", + "keyword_exclude": "" }, { "name": "MailchimpDetector" @@ -53,99 +53,104 @@ "name": "TwilioKeyDetector" } ], + "filters_used": [ + { + "path": "detect_secrets.filters.allowlist.is_line_allowlisted" + }, + { + "path": "detect_secrets.filters.common.is_baseline_file", + "filename": ".secrets.baseline" + }, + { + "path": "detect_secrets.filters.common.is_ignored_due_to_verification_policies", + "min_level": 2 + }, + { + "path": "detect_secrets.filters.heuristic.is_indirect_reference" + }, + { + "path": "detect_secrets.filters.heuristic.is_likely_id_string" + }, + { + "path": "detect_secrets.filters.heuristic.is_lock_file" + }, + { + "path": "detect_secrets.filters.heuristic.is_not_alphanumeric_string" + }, + { + "path": "detect_secrets.filters.heuristic.is_potential_uuid" + }, + { + "path": "detect_secrets.filters.heuristic.is_prefixed_with_dollar_sign" + }, + { + "path": "detect_secrets.filters.heuristic.is_sequential_string" + }, + { + "path": "detect_secrets.filters.heuristic.is_swagger_file" + }, + { + "path": "detect_secrets.filters.heuristic.is_templated_secret" + } + ], "results": { - "Pipfile.lock": [ + ".github/workflows/ci.yml": [ { - "type": "Hex High Entropy String", - "filename": "Pipfile.lock", - "hashed_secret": "f84f5e7ad363cd23405ba19c5d1ece94601865ce", + "type": "Secret Keyword", + "filename": ".github/workflows/ci.yml", + "hashed_secret": "3e26d6750975d678acb8fa35a0f69237881576b0", "is_verified": false, - "line_number": 4, - "is_secret": false + "line_number": 17 } ], - "test/auth/test_private_key.pem": [ + "tests/auth/test_private_key.pem": [ { "type": "Private Key", - "filename": "test/auth/test_private_key.pem", + "filename": "tests/auth/test_private_key.pem", "hashed_secret": "be4fc4886bd949b369d5e092eb87494f12e57e5b", "is_verified": false, - "line_number": 1, - "is_secret": false + "line_number": 1 } ], - "test/auth/test_private_key_2.pem": [ + "tests/auth/test_private_key_2.pem": [ { "type": "Private Key", - "filename": "test/auth/test_private_key_2.pem", + "filename": "tests/auth/test_private_key_2.pem", "hashed_secret": "be4fc4886bd949b369d5e092eb87494f12e57e5b", "is_verified": false, - "line_number": 1, - "is_secret": false + "line_number": 1 } ], - "test/hmac4/test_hmac4.py": [ + "tests/hmac4/test_hmac4.py": [ { - "type": "Hex High Entropy String", - "filename": "test/hmac4/test_hmac4.py", - "hashed_secret": "62c2d5271399e315bf07038e7d538f1f2e947e6b", + "type": "Base64 High Entropy String", + "filename": "tests/hmac4/test_hmac4.py", + "hashed_secret": "56c1d3d608e82b0d0153eb3912cdfcf33b61b4ea", "is_verified": false, - "line_number": 188, - "is_secret": false + "line_number": 64 }, { "type": "Secret Keyword", - "filename": "test/hmac4/test_hmac4.py", - "hashed_secret": "110e32fb8e6cb58dabbe8462821c66da052e0282", + "filename": "tests/hmac4/test_hmac4.py", + "hashed_secret": "56c1d3d608e82b0d0153eb3912cdfcf33b61b4ea", "is_verified": false, - "line_number": 230, - "is_secret": false + "line_number": 64 }, { - "type": "Base64 High Entropy String", - "filename": "test/hmac4/test_hmac4.py", + "type": "Hex High Entropy String", + "filename": "tests/hmac4/test_hmac4.py", + "hashed_secret": "62c2d5271399e315bf07038e7d538f1f2e947e6b", + "is_verified": false, + "line_number": 188 + }, + { + "type": "AWS Access Key", + "filename": "tests/hmac4/test_hmac4.py", "hashed_secret": "56c1d3d608e82b0d0153eb3912cdfcf33b61b4ea", "is_verified": false, - "line_number": 230, - "is_secret": false + "line_number": 195 } ] }, - "version": "1.5.0", - "filters_used": [ - { - "path": "detect_secrets.filters.allowlist.is_line_allowlisted" - }, - { - "path": "detect_secrets.filters.heuristic.is_sequential_string" - }, - { - "path": "detect_secrets.filters.heuristic.is_potential_uuid" - }, - { - "path": "detect_secrets.filters.heuristic.is_likely_id_string" - }, - { - "path": "detect_secrets.filters.heuristic.is_templated_secret" - }, - { - "path": "detect_secrets.filters.heuristic.is_prefixed_with_dollar_sign" - }, - { - "path": "detect_secrets.filters.heuristic.is_indirect_reference" - }, - { - "path": "detect_secrets.filters.common.is_ignored_due_to_verification_policies", - "min_level": 2 - }, - { - "path": "detect_secrets.filters.heuristic.is_lock_file" - }, - { - "path": "detect_secrets.filters.heuristic.is_not_alphanumeric_string" - }, - { - "path": "detect_secrets.filters.heuristic.is_swagger_file" - } - ] + "generated_at": "2026-01-09T19:27:53Z" } diff --git a/poetry.lock b/poetry.lock index 6cddf3c..f314276 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 2.1.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. 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a/pull_request_template.md b/pull_request_template.md deleted file mode 100644 index 4105e39..0000000 --- a/pull_request_template.md +++ /dev/null @@ -1,21 +0,0 @@ -Description about what this pull request does. - -Please make sure to follow the [DEV guidelines](https://gen3.org/resources/developer/dev-introduction/) before asking for review. - -### New Features -- Implemented XXX - -### Breaking Changes - - -### Bug Fixes - - -### Improvements - - -### Dependency updates - - -### Deployment changes - diff --git a/pyproject.toml b/pyproject.toml index d65dd58..6e5a0c9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,14 +1,14 @@ [tool.poetry] name = "cdispyutils" -version = "2.4.1" +version = "2.5.0" description = "This package includes several utility Python tools for the Gen3 stack." authors = ["CTDS UChicago "] license = "Apache-2.0" [tool.poetry.dependencies] -python = "^3.9" +python = ">=3.13,<4" cdiserrors = "*" -cryptography = "^43.0.1" +cdislogging = "*" # unless this library explicitly uses features known only to a library version # above a certain version, allow flexibility for consumers of this library to # limit the version as necessary @@ -16,14 +16,21 @@ requests = "*" Flask = "*" PyJWT = "*" prometheus-client = "*" +matplotlib = { version = "*", optional = true } +numpy = { version = "*", optional = true } +uwsgi = { version = "*", optional = true } +Werkzeug = { version = "*", optional = true } -[tool.poetry.dev-dependencies] +[tool.poetry.group.dev.dependencies] pytest = "*" pytest-flask = "*" mock = "*" +deptry = "^0.24.0" +cryptography = "*" [tool.poetry.extras] profiling = ["Werkzeug", "matplotlib", "numpy"] +uwsgi = ["uwsgi"] [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/test/.DS_Store b/test/.DS_Store deleted file mode 100644 index 5008ddf..0000000 Binary files a/test/.DS_Store and /dev/null differ diff --git a/test/ci_commands_scripts.sh b/test/ci_commands_scripts.sh deleted file mode 100644 index 2ae6fc1..0000000 --- a/test/ci_commands_scripts.sh +++ /dev/null @@ -1 +0,0 @@ -poetry run pytest -vv \ No newline at end of file diff --git a/test/__init__.py b/tests/__init__.py similarity index 100% rename from test/__init__.py rename to tests/__init__.py diff --git a/test/auth/__init__.py b/tests/auth/__init__.py similarity index 100% rename from test/auth/__init__.py rename to tests/auth/__init__.py diff --git a/test/auth/conftest.py b/tests/auth/conftest.py similarity index 100% rename from test/auth/conftest.py rename to tests/auth/conftest.py diff --git a/test/auth/test_jwt.py b/tests/auth/test_jwt.py similarity index 100% rename from test/auth/test_jwt.py rename to tests/auth/test_jwt.py diff --git a/test/auth/test_private_key.pem b/tests/auth/test_private_key.pem similarity index 100% rename from test/auth/test_private_key.pem rename to tests/auth/test_private_key.pem diff --git a/test/auth/test_private_key_2.pem b/tests/auth/test_private_key_2.pem similarity index 100% rename from test/auth/test_private_key_2.pem rename to tests/auth/test_private_key_2.pem diff --git a/test/auth/test_public_key.pem b/tests/auth/test_public_key.pem similarity index 100% rename from test/auth/test_public_key.pem rename to tests/auth/test_public_key.pem diff --git a/test/auth/test_public_key_2.pem b/tests/auth/test_public_key_2.pem similarity index 100% rename from test/auth/test_public_key_2.pem rename to tests/auth/test_public_key_2.pem diff --git a/test/hmac4/__init__.py b/tests/hmac4/__init__.py similarity index 100% rename from test/hmac4/__init__.py rename to tests/hmac4/__init__.py diff --git a/test/hmac4/test_hmac4.py b/tests/hmac4/test_hmac4.py similarity index 99% rename from test/hmac4/test_hmac4.py rename to tests/hmac4/test_hmac4.py index b8795e2..619ce99 100644 --- a/test/hmac4/test_hmac4.py +++ b/tests/hmac4/test_hmac4.py @@ -13,7 +13,7 @@ from urllib.parse import urlparse, quote_plus, quote import requests -from test.mock_datetime import mock_datetime +from tests.mock_datetime import mock_datetime sys.path = ["../../"] + sys.path diff --git a/test/mock_datetime.py b/tests/mock_datetime.py similarity index 100% rename from test/mock_datetime.py rename to tests/mock_datetime.py diff --git a/test/test_metrics.py b/tests/test_metrics.py similarity index 100% rename from test/test_metrics.py rename to tests/test_metrics.py diff --git a/test/test_uwsgi.py b/tests/test_uwsgi.py similarity index 100% rename from test/test_uwsgi.py rename to tests/test_uwsgi.py