Epistasis

First run not_zero_gamma.sh from the folder evolution through the following command. Specify the amount of runs. Do not forget to modify the pathway for your local machine.

../not_zero_gamma.sh $runs

This creates a folder with results in the current directory.

Then run mod_zero_gamma.sh to group the FASTA files through generations.

./mod_zero_gamma.sh

The code for visualization is in nzg_plotting.ipynb.