autoreg

A research compendium: Transcriptional regulation of autophagy during adipocyte differentiation

Setting up the docker environment

The analysis was run on a docker image based on the the latest rocker/verse. Other R packages were added to the image and were made available as an image that can be obtained and launched on any local machine running docker.

$ docker pull bcmslab/autoreg:latest
$ docker run -it bcmslab/autoreg:latest bash

Obtaining the source code

The source code is hosted publicly on this repository in the form of a research compendium. This includes the scripts to download, prepare and analyze the data. From within the container, git can be used to clone the source code.

The following code clones the repository containing the source code.

$ git clone http://github.com/BCMSLab/autoreg

Runing the analysis

In the submodule autoreg, run make

$ cd autoreg
$ make analysis

Details of the R environment

The version of R that was used to perform this analysis is the 3.7.0 (2019-04-07) on x86\_64-pc-linux-gnu.