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remove ref to bnd #44

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Merged
martinesparza merged 4 commits into from
Jun 9, 2025
Merged

remove ref to bnd #44

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dcff1b4
remove ref to bnd
AtMostafa Jun 5, 2025
048709f
Update anipose_interface.py
AtMostafa Jun 5, 2025
5400fa7
remove ref to bnd from cli.py
AtMostafa Jun 5, 2025
bbecc6d
remove ref to bnd
AtMostafa Jun 5, 2025
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6 changes: 3 additions & 3 deletions bnd/cli.py
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Original file line number Diff line number Diff line change
Expand Up @@ -61,7 +61,7 @@ def to_pyal(
`bnd to-pyal M037_2024_01_01_10_00 -c # Uses custom mapping
"""
_check_processing_dependencies()
from bnd.pipeline.pyaldata import run_pyaldata_conversion
from .pipeline.pyaldata import run_pyaldata_conversion

# Load config and get session path
config = _load_config()
Expand Down Expand Up @@ -105,7 +105,7 @@ def to_nwb(
"""
# TODO: Add channel map argument: no-map, default-map, custom-map
# _check_processing_dependencies()
from bnd.pipeline.nwb import run_nwb_conversion
from .pipeline.nwb import run_nwb_conversion

config = _load_config()
session_path = config.get_local_session_path(session_name)
Expand All @@ -129,7 +129,7 @@ def ksort(session_name: str = typer.Argument(help="Session name to kilosort")) -
"""
# this will throw an error if the dependencies are not available
_check_processing_dependencies()
from bnd.pipeline.kilosort import run_kilosort_on_session
from .pipeline.kilosort import run_kilosort_on_session

config = _load_config()
session_path = config.get_local_session_path(session_name)
Expand Down
2 changes: 1 addition & 1 deletion bnd/pipeline/nwbtools/anipose_interface.py
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Expand Up @@ -12,7 +12,7 @@
from neuroconv.utils import DeepDict
from pynwb import NWBFile

from bnd import set_logging
from ...logger import set_logging

logger = set_logging(__name__)

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