Prerequisites

Make sure nextflow, conda and singularity (or docker) are in the PATH.

Quick start (lsf)

1. git pull this repo
2. Go to interactive session (you will need access to imaging queue): bsub -q imaging -n1 -M6000 -R"select[mem>6000] rusage[mem=6000]" -Is $SHELL
3. Run bash lsf.sh [path-to-yaml-config], in a folder where you have write permission