Minor bug fixes and updates#101

Merged

The9Cat merged 94 commits intomainfrom

minorFixesAndUpdates

Dec 28, 2024

Commits on Jul 7, 2024

Added Koopman experimental features to expMSSA
Martin D. Weinberg
committed

Commits on Jul 29, 2024

Merge branch 'devel' into KoopmanHankel
Martin D. Weinberg
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Comment change only
Martin D. Weinberg
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Commits on Jul 30, 2024

Added RKHS EDMD methods [no ci]
Martin D. Weinberg
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Commits on Aug 7, 2024

Bug fixes for KoopmanRKHS [no ci]
Martin D. Weinberg
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Commits on Aug 8, 2024

Merge branch 'pointMesh' into KoopmanHankel
Martin D. Weinberg
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Commits on Aug 11, 2024

Some additional orbit tests
Martin D. Weinberg
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Commits on Aug 12, 2024

Added Kepler test to KoopmanRKHS
Martin D. Weinberg
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Commits on Aug 20, 2024

Comment and output formating changes only
Martin D. Weinberg
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Commits on Aug 23, 2024

Fix nEV storage [no ci]
Martin D. Weinberg
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Commits on Aug 24, 2024

Update to RKHS constructor and additional stdout diagnostics [no ci]
Martin D. Weinberg
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More precision in diagonstic output [no ci]
Martin D. Weinberg
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Commits on Aug 25, 2024

Updates; incomplete implementation [no ci]
Martin D. Weinberg
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Commits on Aug 26, 2024

Implemented and compiled, but almost certainly not working. Now for detailed testing [no ci]
Martin D. Weinberg
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Commits on Aug 27, 2024

Some additional debugging; needs more explicit checking; clearly not yet passing consistency checks [no ci]
Martin D. Weinberg
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Commits on Aug 29, 2024

More updates for Liouville RKHS [no ci]
Martin D. Weinberg
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Added Singular Liouville method to the Liouville RKHS class [no ci]
Martin D. Weinberg
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Commits on Aug 31, 2024

Add OpenMP support to RKHS loops; switch from substep number to substep time step [no ci]
Martin D. Weinberg
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Commits on Sep 3, 2024

Added OpenMP support [no ci]
Martin D. Weinberg
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Some additional diagnostic checks [no ci]
Martin D. Weinberg
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Commits on Sep 10, 2024

Update for VTK-9 compile [no ci]
Martin D. Weinberg
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Commits on Sep 14, 2024

A bunch of updates for language version consistency based on a Clang 18 compile
Martin D. Weinberg
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Merge branch 'KoopmanRKHS' of github.com:EXP-code/EXP into KoopmanRKHS
Martin D. Weinberg
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Commits on Sep 19, 2024

Missing cassert
Martin D. Weinberg
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Commits on Sep 26, 2024

Use Eigen::Ref<> to pass arrays to prevent pybind11 mapping failure in pyEXP
Martin D. Weinberg
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Fix norm issue discovered in C++ tests
Martin D. Weinberg
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Fixes for H5 API
Martin D. Weinberg
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Do not copy data if nimax or ndmax are zero
Martin D. Weinberg
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Merge branch 'KoopmanRKHS' of github.com:EXP-code/EXP into KoopmanRKHS
Martin D. Weinberg
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Commits on Sep 27, 2024

Missing cassert header
The9Cat
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Merge branch 'KoopmanRKHS' of github.com:EXP-code/EXP into KoopmanRKHS
The9Cat
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Make the default nmax=12, rather than nmaxfid. More sane.
Martin D. Weinberg
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OutVel should put its file in outdir for consistence
Martin D. Weinberg
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Commits on Sep 28, 2024

Updates for setMatrix() method for field coefficient types which need to set tensors
Martin D. Weinberg
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Merge branch 'KoopmanRKHS' of github.com:EXP-code/EXP into KoopmanRKHS
Martin D. Weinberg
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Remove Eigen::Ref from setMatrix to allow more flexibility
Martin D. Weinberg
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Fix typos in diagnostic errors [no ci]
Martin D. Weinberg
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Commits on Oct 5, 2024

Change to variable number of fields in SphFldStruct and CylFldStruct constructors
Martin D. Weinberg
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Change names of Eigen::Tensor wrappers for consistency
Martin D. Weinberg
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Commits on Oct 10, 2024

Commits on Oct 27, 2024

Update basis normalization
Martin D. Weinberg
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Commits on Oct 28, 2024

Tests for 2d basis functions
Martin D. Weinberg
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Merge branch 'main' into KoopmanRKHS
Martin D. Weinberg
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Norm updates
Martin D. Weinberg
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Fix clang options for Linux
Martin D. Weinberg
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Commits on Nov 2, 2024

Make the force/coefficient evaluation consistent with the 2d basis norm
Martin D. Weinberg
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Commits on Nov 6, 2024

Updates for standalone VTK file writing
Martin D. Weinberg
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Missing removal of 2Pi factors from PolarBasis
Martin D. Weinberg
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Commits on Nov 12, 2024

Added lmaxfid to coefficient info
Martin D. Weinberg
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Add KDtree to its own namespace and allow a NN cache for multithreaded operation
Martin D. Weinberg
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Commits on Nov 15, 2024

Update to normalization scheme for 2-d bases
Martin D. Weinberg
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Fix backward compatibility for old GNU and except Clang
Martin D. Weinberg
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Commits on Nov 18, 2024

Add model tag
Martin D. Weinberg
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Commits on Nov 19, 2024

Separate background from target models in PolarModel
Martin D. Weinberg
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Fixes for FlatDisk with CUDA
Martin D. Weinberg
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Use EmpCyl2d::ModelCyl pot and dpot functions for background
Martin D. Weinberg
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Commits on Nov 20, 2024

Added CBDisk for testing; not optimized in any way and no CUDA implementation
Martin D. Weinberg
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Commits on Nov 21, 2024

Fix seg fault when exiting before output or container object is instantiated
Martin D. Weinberg
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Zero background arrays and only fill if disk object is instantiated
Martin D. Weinberg
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Missing flag disk tag
Martin D. Weinberg
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Allow 2d and 3d norm switch; only 2d currently used so this makes no change
Martin D. Weinberg
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Output updates only
Martin D. Weinberg
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Merge branch 'VTKfiles' of github.com:EXP-code/EXP into VTKfiles
Martin D. Weinberg
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Commits on Nov 26, 2024

Allow gendisk2d to create an arbitrary EmpCyl2d basis
Martin D. Weinberg
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Fix scaling for CB disk
Martin D. Weinberg
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Clean up only
Martin D. Weinberg
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Add scaling for CBDisk to pyEXP
Martin D. Weinberg
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Commits on Dec 8, 2024

Remove the default 'diag' output suffix
Martin D. Weinberg
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Commits on Dec 10, 2024

Use 'find_package' to identify the git location
Martin D. Weinberg
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Merge branch 'VTKfiles' of github.com:EXP-code/EXP into VTKfiles
Martin D. Weinberg
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Commits on Dec 17, 2024

Added a spherical histogram1d with logarithmic scaling to pyEXP; since this is a new function, there is no API change
Martin D. Weinberg
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Commits on Dec 19, 2024

Implement pseudo-forces for 'Orient' moving 'CENTER' non-inertial frames
Martin D. Weinberg
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Commits on Dec 20, 2024

Fix mistake in ExternalForce switching for CUDA in ComponentContainer
Martin D. Weinberg
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Merge branch 'VTKfiles' of github.com:EXP-code/EXP into VTKfiles
Martin D. Weinberg
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Missing files for pseudo-force computation from center time series
Martin D. Weinberg
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Merge branch 'VTKfiles' of github.com:EXP-code/EXP into VTKfiles
Martin D. Weinberg
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Initialize Component's 'modified' value
Martin D. Weinberg
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Make debug value static to prevent namespace and addressing issues
Martin D. Weinberg
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Commits on Dec 21, 2024

Removed RKHS stuff and made a new branch for the rest
Martin D. Weinberg
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Commits on Dec 22, 2024

A few more AddAccExt changes
michael-petersen
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Added more info on 'git submodule'
Martin D. Weinberg
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Changed 'dump' to 'dumpbasis'. Some doxygen parameter descriptions
Martin D. Weinberg
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Changed 'dump' to 'dumpbasis'
Martin D. Weinberg
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One more AddAccExt change
Martin D. Weinberg
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Restore SVD options for the Koopman member in expMSSA
Martin D. Weinberg
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Commits on Dec 23, 2024

Implementation of the pseudo-force estimator for Orient::Axis
Martin D. Weinberg
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Merge branch 'minorFixesAndUpdates' of github.com:EXP-code/EXP into minorFixesAndUpdates
Martin D. Weinberg
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Do not apply pseudo force if EJdryrun=True, although the values will be computed and recorded in the orient log file
Martin D. Weinberg
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Don't call for a pseudoforce in output diagnostics if not instantiated
Martin D. Weinberg
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Don't call for a pseudoforce in output diagnostics if not instantiated
Martin D. Weinberg
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Commits on Dec 26, 2024

Add axis to diagnostic output. PseudoAccel should add the original data, not the linear estimate, oops
Martin D. Weinberg
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Fill the state vector before approximating any values
Martin D. Weinberg
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Add divide-by-zero check in quadratic regression formula
Martin D. Weinberg
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