Small edits for JOSS review

Paper/paper/paper.bib

@@ -10,7 +10,7 @@ @book{Binney:2008
 @ARTICLE{Gadget4,
        author = {{Springel}, Volker and {Pakmor}, R{\"u}diger and {Zier}, Oliver and {Reinecke}, Martin},
         title = "{Simulating cosmic structure formation with the GADGET-4 code}",
-      journal = {\mnras},
+      journal = {Monthly Notices of the RAS},
      keywords = {methods: numerical, galaxies: interactions, dark matter, Astrophysics - Instrumentation and Methods for Astrophysics, Astrophysics - Cosmology and Nongalactic Astrophysics},
          year = 2021,
         month = sep,
@@ -30,7 +30,7 @@ @ARTICLE{Gadget4
 @ARTICLE{Wang:15,
        author = {{Wang}, Long and {Spurzem}, Rainer and {Aarseth}, Sverre and {Nitadori}, Keigo and {Berczik}, Peter and {Kouwenhoven}, M.~B.~N. and {Naab}, Thorsten},
         title = "{NBODY6++GPU: ready for the gravitational million-body problem}",
-      journal = {\mnras},
+      journal = {Monthly Notices of the RAS},
      keywords = {methods: numerical, globular clusters: general, Astrophysics - Instrumentation and Methods for Astrophysics, Astrophysics - Solar and Stellar Astrophysics},
          year = 2015,
         month = jul,
@@ -68,7 +68,7 @@ @article{gaia_DR2_disk
 	Doi = {10.1051/0004-6361/201832865},
 	Eid = {A11},
 	Eprint = {1804.09380},
-	Journal = {A\&Ap},
+	Journal = {Astronomy and Astrophysics},
 	Month = {Aug},
 	Pages = {A11},
 	Primaryclass = {astro-ph.GA},
@@ -122,7 +122,7 @@ @misc{pybind11
 @ARTICLE{Weinberg:23,
        author = {{Weinberg}, Martin D.},
         title = "{New dipole instabilities in spherical stellar systems}",
-      journal = {MNRAS},
+      journal = {Monthly Notices of the RAS},
          year = 2023,
         month = nov,
        volume = {525},
@@ -137,7 +137,7 @@ @ARTICLE{Weinberg:23
 @ARTICLE{Weinberg:21,
        author = {{Weinberg}, Martin D. and {Petersen}, Michael S.},
         title = "{Using multichannel singular spectrum analysis to study galaxy dynamics}",
-      journal = {MNRAS},
+      journal = {Monthly Notices of the RAS},
          year = 2021,
         month = mar,
        volume = {501},
@@ -152,7 +152,7 @@ @ARTICLE{Weinberg:21
 @ARTICLE{Petersen:22,
        author = {{Petersen}, Michael S. and {Weinberg}, Martin D. and {Katz}, Neal},
         title = "{EXP: N-body integration using basis function expansions}",
-      journal = {\mnras},
+      journal = {Monthly Notices of the RAS},
      keywords = {methods: numerical, Galaxy: halo, galaxies: haloes, galaxies: kinematics and dynamics, galaxies: structure, Astrophysics - Astrophysics of Galaxies, Astrophysics - Instrumentation and Methods for Astrophysics},
          year = 2022,
         month = mar,
@@ -168,7 +168,7 @@ @ARTICLE{Petersen:22
 @ARTICLE{Johnson:23,
        author = {{Johnson}, Alexander C. and {Petersen}, Michael S. and {Johnston}, Kathryn V. and {Weinberg}, Martin D.},
         title = "{Dynamical data mining captures disc-halo couplings that structure galaxies}",
-      journal = {MNRAS},
+      journal = {Monthly Notices of the RAS},
      keywords = {galaxies: disc, galaxies: haloes, galaxies: structure, Astrophysics - Astrophysics of Galaxies, Astrophysics - Instrumentation and Methods for Astrophysics},
          year = 2023,
         month = may,
@@ -228,7 +228,7 @@ @Article{matplotlib
 @ARTICLE{Weinberg:99,
        author = {{Weinberg}, Martin D.},
         title = "{An Adaptive Algorithm for N-Body Field Expansions}",
-      journal = {\aj},
+      journal = {Astronomical Journal},
      keywords = {CELESTIAL MECHANICS, STELLAR DYNAMICS, GALAXIES: STRUCTURE, GALAXY: STRUCTURE, METHODS: NUMERICAL, Astrophysics},
          year = 1999,
         month = jan,
@@ -296,7 +296,7 @@ @manual{mpi41
 @ARTICLE{GaravitoCamargo:21,
        author = {{Garavito-Camargo}, Nicol{\'a}s and {Besla}, Gurtina and {Laporte}, Chervin F.~P. and {Price-Whelan}, Adrian M. and {Cunningham}, Emily C. and {Johnston}, Kathryn V. and {Weinberg}, Martin and {G{\'o}mez}, Facundo A.},
         title = "{Quantifying the Impact of the Large Magellanic Cloud on the Structure of the Milky Way's Dark Matter Halo Using Basis Function Expansions}",
-      journal = {\apj},
+      journal = {Astrophysical Journal},
      keywords = {Milky Way dynamics, Large Magellanic Cloud, Milky Way dark matter halo, 1051, 903, 1049, Astrophysics - Astrophysics of Galaxies},
          year = 2021,
         month = oct,
@@ -315,7 +315,7 @@ @ARTICLE{GaravitoCamargo:21
 @ARTICLE{Hernquist:90,
        author = {{Hernquist}, Lars},
         title = "{An Analytical Model for Spherical Galaxies and Bulges}",
-      journal = {\apj},
+      journal = {Astrophysical Journal},
      keywords = {Computational Astrophysics, Elliptical Galaxies, Galactic Bulge, Galactic Structure, Astronomical Models, Astronomical Photometry, Brightness Distribution, Distribution Functions, Astrophysics, GALAXIES: PHOTOMETRY, GALAXIES: STRUCTURE},
          year = 1990,
         month = jun,
@@ -331,7 +331,7 @@ @ARTICLE{Hernquist:90
 @ARTICLE{Hernquist:92,
        author = {{Hernquist}, Lars and {Ostriker}, Jeremiah P.},
         title = "{A Self-consistent Field Method for Galactic Dynamics}",
-      journal = {\apj},
+      journal = {Astrophysical Journal},
      keywords = {Celestial Mechanics, Computational Astrophysics, Galaxies, Stellar Motions, Algorithms, Astronomical Models, Dynamical Systems, Numerical Analysis, Astrophysics, CELESTIAL MECHANICS, STELLAR DYNAMICS, METHODS: NUMERICAL},
          year = 1992,
         month = feb,
@@ -345,7 +345,7 @@ @ARTICLE{Hernquist:92
 @ARTICLE{NFW,
        author = {{Navarro}, Julio F. and {Frenk}, Carlos S. and {White}, Simon D.~M.},
         title = "{A Universal Density Profile from Hierarchical Clustering}",
-      journal = {\apj},
+      journal = {Astrophysical Journal},
      keywords = {Cosmology: Theory, Cosmology: Dark Matter, Galaxies: Halos, Methods: Numerical, Astrophysics},
          year = 1997,
         month = dec,

Paper/paper/paper.md

@@ -78,7 +78,7 @@ the variation of _any_ field in space.  In the context of galactic
 dynamics, these fields may be density, potential, force, velocity
 fields or any intrinsic field produced by simulations such as
 chemistry data.  By combining the coefficient information through time
-using multichannel singular spectral analysis (mSSA; @SSA), a
+using multichannel singular spectral analysis [mSSA, @SSA], a
 non-parametric spectral technique, `EXP` can deepen our understanding
 by discovering the dynamics of galaxy evolution directly from
 simulated, and by analogy, observed data.
@@ -184,15 +184,15 @@ table above as well as coefficients for an input data set.  Each of
 these tools are Python classes that accept `numpy` [@numpy] arrays for
 immediate interoperability with `matplotlib` [@matplotlib] and
 Astropy.  We include a verified set of stand-alone routines that read
-phase-space files from many major cosmological tree codes (for example,
-@Gadget4) and produce
+phase-space files from many major cosmological tree codes [for example,
+@Gadget4] and produce
 BFE-based analyses.  The code suite includes adapters for reading and
 writing phase space for many of the widely used cosmology codes, with
 a base class for developing new ones.  There are multiple ways to use
 the versatile and modular tools in `pyEXP`, and we anticipate
 pipelines that we have not yet imagined. The flexibility of the basis
 sets available in `EXP` greatly enhances the number of available basis
-sets implemented in Python (see, e.g. @gala).
+sets implemented in Python [see, e.g. @gala].
 
 
 ## Using pyEXP to analyze time series