Rare Variant Meta-Analysis

Input Files

-LD matrix : can be obtained from SAIGE step3_LDmat.R

-GWAS summary

--num_cohorts : number of cohorts
--chr : chrmosome number
--info_file_path : path to the marker_info.txt file generated from SAIGE 'step3_LDmat.R'. Need to specify marker_info.txt file from each and every cohort delimited by white-space (' ')
--gene_file_prefix : prefix to the LD matrix separated by genes (also generated from SAIGE step3_LDmat.R) usually same as marker_info.txt file's prefix
--gwas_path : path to the GWAS summary. Need to specify GWAS summary file from each and every cohort delimited by white-space (' ')
output_prefix: directory for output

example command could be found in 'test_run.sh'

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
test_input		test_input
test_output		test_output
Lib_v3.R		Lib_v3.R
README.md		README.md
RV_meta.R		RV_meta.R
test_log.out		test_log.out
test_run.sh		test_run.sh