Skip to content

Add marburg #4

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
anna-parker wants to merge 5 commits into
base: main
Choose a base branch
from
Open

Add marburg #4

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
267b5c0
Add marburg dataset
anna-parker Nov 3, 2024
7e85821
Update for release
anna-parker Nov 4, 2024
ff34381
Update
anna-parker Nov 4, 2024
55cfd68
Remove duplicate clade from tree
anna-parker Nov 4, 2024
a967a40
update tree to use clade founder
anna-parker Nov 4, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 5 additions & 1 deletion README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -26,4 +26,8 @@ for i in {1..8}; do
nextclade_dataset_server=https://raw.githubusercontent.com/genspectrum/nextclade-datasets/main/data
nextclade3 dataset get --name $nextclade_dataset_name --server $nextclade_dataset_server --output-dir output$i
done
```
```

List of defaults for tuning alignment parameters: https://github.com/nextstrain/nextclade/blob/48801faba4a364578350c938b80a6c33ae1e5ed5/packages/nextclade/src/align/params.rs#L153

QC docs: https://docs.nextstrain.org/projects/nextclade/en/stable/user/algorithm/06-quality-control.html
Loading