Handley Lab SOPs for common bioinfomatic tasks.
SOPS are organized in the Wiki portion of this repository.
Presenter(s) are responsible for food for that day. Save you receipts for reimbursement.
| Date | Topic | Presenter(s) |
|---|---|---|
| 29-June | Basic Git | Scott H. |
| 6-July | Project Outlines | Everyone |
| 13-July | Lab Unix | Scott H. |
| 20-July | Cancelled | Cancelled |
| 27-July | Dplyr | Anne P. / Kathie M. |
| 3-August | Statistics | Andrew K. |
| 10-August | Open Project Time | Everyone (SH out of town) |
| 17-August | 16S rRNA Analysis - dada2 | Leran W. / Scott H. |
| 24-August | 16S rRNA Analysis - Basic Workflow | Leran W. / Scott H. |
| 31-August | 16S rRNA Analysis - Continued | Leran W. / Scott H. |
| 30-September | Viral Genomics | Ana J. and Binita F. |
| 7-October | Code Review | TBD |
| 14-October | Code Review | Andrew Kim |
Other potential topics:
- code reviews ******
- snakemake ***
- hecatomb ***
- demultiplexing ***
- data management and deposition
- metagenomics (metaphlan3)
- metagenomic binning
- metagenomic assembly (megathit, IDBA-UD, flye)
- code testing