deployr-dev

Tools for creating cohorts and features, training and deploying models using electronic medical record data.

1. Clone the repo git clone https://github.com/HealthRex/deployr-dev.git

2. Create a new environment, note python version conda create -n healthrex_ml python=3.7.6

3. Activate new env conda activate healthrex_ml

4. Install healthrex_ml pip install -e .

5. Install dependencies pip install -r requirements.txt

6. Install lightbm (with conda) conda install lightgbm=3.1.1

healthrex_ml/cohorts

Cohort definitions for various supervised ml tasks

healthrex_ml/extractors

Grab features from our bq projects

healthrex_ml/featurizers

Transform features grabbed by extractors

healthrex_ml/models

Define models

healthrex_ml/trainers

Train models

healthrex_ml/datasets

Pytorch datasets