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Michael #52

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a89a94d
new setPMoptions
mnneely Dec 14, 2025
e2ab5b5
Resoloving issues with PM_tutorial
mnneely Jan 9, 2026
ae45add
Merge remote-tracking branch 'origin/main' into Michael
mnneely Jan 9, 2026
92efe79
Update tutorial
mnneely Jan 12, 2026
c7bb11a
fix model looking for backend PMoption
mnneely Jan 13, 2026
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -10,6 +10,7 @@
.DS_Store
PmetricsGit.Rproj


# Build/check artifacts
/*.tar.gz
/*.Rcheck/
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11 changes: 11 additions & 0 deletions Learn/Rscript/Learn.R
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# This is an R script you can use to accompany the "Introduction to Pmetrics" online book.
# You can find the book at https://lapkb.github.io/PM_tutorial/


##### EXECUTE THIS CODE

library(Pmetrics) # load the Pmetrics library
wd <- "/Users/mneely/Library/CloudStorage/OneDrive-CHILDRENSHOSPITALLOSANGELES/Documents/LAPK/Development/Pmetrics_rust/Learn"
setwd(wd) # all needed files will be here

##### PASTE THE CODE FROM THE BOOK BELOW THIS LINE
260 changes: 260 additions & 0 deletions Learn/src/ex.csv
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id,time,dose,out,wt,africa,age,gender,height
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1,122,.,14.98,46.7,1,21,1,160
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1,129,.,20.15,46.7,1,21,1,160
1,132,.,14.97,46.7,1,21,1,160
1,143.98,.,12.57,46.7,1,21,1,160
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2,24,600,.,66.5,1,30,1,174
2,48,600,.,66.5,1,30,1,174
2,72,600,.,66.5,1,30,1,174
2,96,600,.,66.5,1,30,1,174
2,120,.,3.56,66.5,1,30,1,174
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2,144,.,3.76,66.5,1,30,1,174
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3,24,600,.,46.7,1,24,0,164
3,48,600,.,46.7,1,24,0,164
3,72,600,.,46.7,1,24,0,164
3,96,600,.,46.7,1,24,0,164
3,120,600,.,46.7,1,24,0,164
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3,121.07,.,3.24,46.7,1,24,0,164
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3,132.1,.,4.71,46.7,1,24,0,164
3,144.08,.,3.82,46.7,1,24,0,164
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4,132,.,3.69,50.8,1,25,1,165
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5,48,600,.,65.8,1,22,1,181
5,72,600,.,65.8,1,22,1,181
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5,120,.,2.93,65.8,1,22,1,181
5,120,600,.,65.8,1,22,1,181
5,121,.,2.64,65.8,1,22,1,181
5,122,.,4.8,65.8,1,22,1,181
5,126,.,3.7,65.8,1,22,1,181
5,129.02,.,4.13,65.8,1,22,1,181
5,132,.,2.81,65.8,1,22,1,181
5,144,.,2.21,65.8,1,22,1,181
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6,48,600,.,65,1,23,1,177
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10,120,600,.,52.1,1,32,1,163
10,121,.,4.36,52.1,1,32,1,163
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11,0,600,.,56.5,1,34,1,165
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11,120,600,.,56.5,1,34,1,165
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11,129,.,6.31,56.5,1,34,1,165
11,132,.,5.82,56.5,1,34,1,165
11,144.13,.,2.63,56.5,1,34,1,165
12,0,600,.,47.9,1,54,0,160
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12,48,600,.,47.9,1,54,0,160
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12,120,600,.,47.9,1,54,0,160
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12,122.13,.,8.66,47.9,1,54,0,160
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12,129,.,9.51,47.9,1,54,0,160
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13,0,600,.,60.5,1,24,1,180
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13,72,600,.,60.5,1,24,1,180
13,96,600,.,60.5,1,24,1,180
13,120,.,6.62,60.5,1,24,1,180
13,120,600,.,60.5,1,24,1,180
13,121,.,3.18,60.5,1,24,1,180
13,122,.,5.41,60.5,1,24,1,180
13,126,.,10.18,60.5,1,24,1,180
13,129.02,.,12.84,60.5,1,24,1,180
13,132,.,12.35,60.5,1,24,1,180
13,144,.,8.06,60.5,1,24,1,180
14,0,600,.,59.2,1,26,1,174
14,24,600,.,59.2,1,26,1,174
14,48,600,.,59.2,1,26,1,174
14,72,600,.,59.2,1,26,1,174
14,96,600,.,59.2,1,26,1,174
14,120,.,3.63,59.2,1,26,1,174
14,120,600,.,59.2,1,26,1,174
14,121,.,4.49,59.2,1,26,1,174
14,122,.,5.5,59.2,1,26,1,174
14,126,.,7.28,59.2,1,26,1,174
14,129,.,5.27,59.2,1,26,1,174
14,132,.,4.89,59.2,1,26,1,174
14,144,.,2.68,59.2,1,26,1,174
15,0,450,.,43,1,19,0,150
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15,48,450,.,43,1,19,0,150
15,72,450,.,43,1,19,0,150
15,96,450,.,43,1,19,0,150
15,120,.,5.53,43,1,19,0,150
15,120,450,.,43,1,19,0,150
15,121,.,4.81,43,1,19,0,150
15,122,.,8.14,43,1,19,0,150
15,126,.,9.96,43,1,19,0,150
15,129,.,8.55,43,1,19,0,150
15,132.05,.,7.54,43,1,19,0,150
15,144.05,.,5.74,43,1,19,0,150
16,0,600,.,64.4,1,25,1,173
16,24,600,.,64.4,1,25,1,173
16,48,600,.,64.4,1,25,1,173
16,72,600,.,64.4,1,25,1,173
16,96,600,.,64.4,1,25,1,173
16,120,.,5.48,64.4,1,25,1,173
16,120,600,.,64.4,1,25,1,173
16,121,.,6.59,64.4,1,25,1,173
16,122,.,8.91,64.4,1,25,1,173
16,126,.,10.57,64.4,1,25,1,173
16,129,.,9.52,64.4,1,25,1,173
16,132,.,7.83,64.4,1,25,1,173
16,143.97,.,4.96,64.4,1,25,1,173
17,0,600,.,54.8,1,23,1,170
17,24,600,.,54.8,1,23,1,170
17,48,600,.,54.8,1,23,1,170
17,72,600,.,54.8,1,23,1,170
17,96,600,.,54.8,1,23,1,170
17,120,.,2.11,54.8,1,23,1,170
17,120,600,.,54.8,1,23,1,170
17,121.02,.,1.86,54.8,1,23,1,170
17,122.02,.,6.92,54.8,1,23,1,170
17,126,.,9.11,54.8,1,23,1,170
17,129,.,6.96,54.8,1,23,1,170
17,132,.,5.64,54.8,1,23,1,170
17,144.08,.,3.59,54.8,1,23,1,170
18,0,450,.,44.3,1,20,0,164
18,24,450,.,44.3,1,20,0,164
18,48,450,.,44.3,1,20,0,164
18,72,450,.,44.3,1,20,0,164
18,96,450,.,44.3,1,20,0,164
18,120,.,7.95,44.3,1,20,0,164
18,120,450,.,44.3,1,20,0,164
18,120.98,.,7.47,44.3,1,20,0,164
18,121.98,.,8.67,44.3,1,20,0,164
18,126,.,13.83,44.3,1,20,0,164
18,129.17,.,14.01,44.3,1,20,0,164
18,132.17,.,8.97,44.3,1,20,0,164
18,143.97,.,8.4,44.3,1,20,0,164
19,0,600,.,50,1,36,1,168
19,24,600,.,50,1,36,1,168
19,48,600,.,50,1,36,1,168
19,72,600,.,50,1,36,1,168
19,96,600,.,50,1,36,1,168
19,120,.,5.42,50,1,36,1,168
19,120,600,.,50,1,36,1,168
19,121,.,7.08,50,1,36,1,168
19,122,.,7.27,50,1,36,1,168
19,125.98,.,20.07,50,1,36,1,168
19,128.98,.,18.24,50,1,36,1,168
19,132,.,15.36,50,1,36,1,168
19,144,.,10.92,50,1,36,1,168
20,0,600,.,59,1,31,1,170
20,24,600,.,59,1,31,1,170
20,48,600,.,59,1,31,1,170
20,72,600,.,59,1,31,1,170
20,96,600,.,59,1,31,1,170
20,120,.,4.71,59,1,31,1,170
20,120,600,.,59,1,31,1,170
20,120.77,.,4.5,59,1,31,1,170
20,121.75,.,3.35,59,1,31,1,170
20,125.67,.,12.35,59,1,31,1,170
20,128.67,.,11.56,59,1,31,1,170
20,143.67,.,6.45,59,1,31,1,170
12 changes: 0 additions & 12 deletions R/DataDescriptions.R
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"locales"


#' @name model
#' @docType data
#' @title Pmetrics model
#' @usage model
#' @format Sample model text
#' @author Michael Neely
#' @keywords datasets


"model"
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