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Merged
remlapmot merged 4 commits into from
Dec 16, 2025
+11 −3
Merged

TwoSampleMR 0.6.29 #667

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54d5ede
Skip tests if MendelianRandomization not installed
remlapmot Dec 16, 2025
a3d9204
Bump version
remlapmot Dec 16, 2025
0f26664
Don't eval chunks if MendelianRandomization not installed
remlapmot Dec 16, 2025
9a1ec63
Update NEWS.md
remlapmot Dec 16, 2025
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
Package: TwoSampleMR
Title: Two Sample MR Functions and Interface to MRC Integrative
Epidemiology Unit OpenGWAS Database
Version: 0.6.28
Version: 0.6.29
Authors@R: c(
person("Gibran", "Hemani", , "g.hemani@bristol.ac.uk", role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-0920-1055")),
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8 changes: 7 additions & 1 deletion NEWS.md
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@@ -1,6 +1,12 @@
# TwoSampleMR v0.6.28

(Release date 2025-12-15)
(Release date 2025-12-16)

* Skip two tests if the **MendelianRandomization** package is not installed and protected the running of the perform_mr vignette.

# TwoSampleMR v0.6.28

(Release date 2025-12-16)

* Allowed the arguments for `clump_data()` to be specified from `read_exposure_data()` (thanks @al3xjwood).
* Fixed two function calls in `mr_moe_single()`
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2 changes: 2 additions & 0 deletions tests/testthat/test_otherformats.R
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Expand Up @@ -6,6 +6,7 @@ load(system.file("extdata", "test_commondata.RData", package = "TwoSampleMR"))

test_that("MRInput", {
skip_if(getRversion() < '4.4.0') # because MendelianRandomization will not be installed
skip_if_not_installed("MendelianRandomization")
w <- dat_to_MRInput(dat, get_correlations = FALSE)
expect_true(length(w) == 1)
expect_true(class(w) == "list")
Expand All @@ -18,6 +19,7 @@ test_that("MRInput with cor", {
skip_if_offline()
skip_if_offline(host = "api.opengwas.io")
skip_if(getRversion() < '4.4.0') # because MendelianRandomization will not be installed
skip_if_not_installed("MendelianRandomization")
w <- tryCatch(
dat_to_MRInput(dat, get_correlations = TRUE)[[1]],
error = skip("Server issues"),
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2 changes: 1 addition & 1 deletion vignettes/perform_mr.Rmd
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Expand Up @@ -13,7 +13,7 @@ vignette: >
---

```{r, include=FALSE}
evalinr44 <- getRversion() >= '4.4.0'
evalinr44 <- (getRversion() >= '4.4.0') && requireNamespace("MendelianRandomization", quietly = TRUE)
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
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