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@PistilliLab

The Pistilli Lab

Software developed by the Pistilli lab.

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  1. ColonyTrace ColonyTrace Public

    A comprehensive software suite for tracking the full lifespan of research mice.

    Python 1

  2. CLAMSwrangler CLAMSwrangler Public

    Python program for cleaning, trimming, binning, and reformatting of data generated by the Columbus Instruments CLAMS for downstream statistical analysis.

    Python

  3. RNAseq-pipeline RNAseq-pipeline Public

    Pipeline for processing bulk RNA-seq data from raw .fastq files to read counts.

    Shell

  4. PHYSwrangler PHYSwrangler Public

    Code to process data generated by Aurora Scientific muscle physiology system.

    Python

  5. miRNAseq-Pipeline miRNAseq-Pipeline Public

    Scripts for processing miRNA sequencing data using the miRDeep2 package

    Shell

  6. SequenceExtract SequenceExtract Public

    Extracts genomic sequences surrounding gene loci supplied in a text file containing Entrez IDs.

    Python

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