SNPs that do not have the highest PP are higlighted

[AMCalejandro]

Hi Brian,

Sorry for the bad post but see an image of the finemapping plots.
I do not know if there is something going on in the selection of the top SNPs to highlight.

At the beginning I thought it could be related with the new names in the multifinemap df for the new version of FINEMAP but this is actually happening for susie as well.
The locus in the image is a case in which there is no consensus SNP, in case you think it might be related...
I cannot share the data for this but happy to have a chat.

If you try to reproduce with the roxygen example, please not the the toy data of locus plot is generated using a previous version of FINEMAP. Maybe worth getting the multifinemap dat with the latest version of FINEMAP, in case the issue is relared to this

[bschilder]

Hey @AMCalejandro , I actually just reworked the way echoplot highlights SNPs. Could you try upgrading and see if that helps? Thanks!

[AMCalejandro]

If you are talking about the updates you made yesterday.
Yes, this is the plot after having run remotes::install_github("RajLabMSSM/echolocatoR") to pull the updates