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1. AVITI_pilot AVITI_pilot Public

   Comparison between AVITI NGS system and Illumina using Cumulus framework

   Jupyter Notebook 1

2. SQuIRE-on-Terra SQuIRE-on-Terra Public

   Create a sharable workspace for SQuIRE, a Bioinformatics tool for quantifying Interspersed Repeat Expressions on the Terra cloud platform.

   WDL 1

3. lilab-bcb/altocumulus lilab-bcb/altocumulus Public

   Command line tool for submitting WDL jobs to Terra or Cromwell server.

   Python 7

4. Lung-Cancer-Web-Development Lung-Cancer-Web-Development Public

   Association of Lung Cancer Imaging with Genomic and Clinical Data

   Jupyter Notebook 1

5. Variant-calling-using-GATK4 Variant-calling-using-GATK4 Public

   Variant calling using GATK4 for a single sample

   HTML 1

6. Single-Cell-Multiome-Scripts Single-Cell-Multiome-Scripts Public

   Reference scripts for upstream and downstream processing of sc-RNA and sc-ATAC data

   Jupyter Notebook 1