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Fix opening gzipped files on Mac #111

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Fix opening gzipped files on Mac #111

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3 changes: 2 additions & 1 deletion protein_tools/scripts/clean_pdb.py
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Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,7 @@
from __future__ import print_function
import sys
import os
import gzip
from sys import argv, stderr, stdout
from os import popen, system
from os.path import exists, basename
Expand Down Expand Up @@ -150,7 +151,7 @@ def open_pdb( name ):
stem = stem[:-4]

if filename[-3:] == '.gz':
lines = popen('zcat '+filename, 'r').readlines()
lines = gzip.open(filename).readlines()
else:
lines = open(filename, 'r').readlines()

Expand Down