Snitkin-Lab-Umich / cauris_panaroo Public

Simple scripts for converting the output of QCD pipelines to be compatible with Panaroo and Orthofinder

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Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
iqtree_scripts		iqtree_scripts
panaroo_scripts		panaroo_scripts
README.md		README.md
run_contamination_check.job		run_contamination_check.job
run_genedata.job		run_genedata.job
run_iqtree.job		run_iqtree.job
run_iqtree_albicans.job		run_iqtree_albicans.job
run_make_iqtree_msas_candida.job		run_make_iqtree_msas_candida.job
run_make_iqtree_msas_haemuli.job		run_make_iqtree_msas_haemuli.job
run_ortho.job		run_ortho.job
run_ortho_diamond_array.job		run_ortho_diamond_array.job
run_ortho_diamond_single.job		run_ortho_diamond_single.job
run_ortho_largemem.job		run_ortho_largemem.job
run_pairsnp.job		run_pairsnp.job
run_panaroo.job		run_panaroo.job
run_panaroo_subset.job		run_panaroo_subset.job
run_preprocess.job		run_preprocess.job
run_rare_gene_check.job		run_rare_gene_check.job
run_wrap.job		run_wrap.job