(WIP)Added analyze_selection_criteria.ipynb and edit ems_training notebook #1268
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
katiecho45
changed the title
Architecture Changes: - Created gems_pipeline.py from model_training_model5_only.py - Implemented subcommand structure (train/predict modes) - train_model(): Contains all existing training logic - predict_model(): Placeholder for future functionality - Added comprehensive docstrings and help messages Documentation Updates: - Updated notebook to use new command format - Added GEMS acronym explanation (Generalized Expression Modifier Scores) - Updated all code examples to reflect new syntax Command Format: OLD: python model_training_model5_only.py <cohort> <chr> --data_config --model_config NEW: python gems_pipeline.py train <cohort> <chr> --data_config --model_config
katiecho45
changed the title
# Please enter a commit message to explain why this merge is necessary, # especially if it merges an updated upstream into a topic branch. # # Lines starting with '#' will be ignored, and an empty message aborts # the commit.
- Revised title for clarity - Added authors
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Added jupyter notebook named: analyze_selection_criteria.ipynb
Rename the file model_training_model5_only.py → gems_pipeline.py
Make edits to ems_training notebook and deleted repeated phrases