compatible with pecotmr changes #1281
Open
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
… a minor typo in update_twas_methods
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Lines 581–583: Fix an error in update_twas_method when TWAS results are empty.(doesn't afface results but make it difficult to monitor the progress of genome-wide analysis)
Lines 683–684, 688: Make the code compatible with recent pecotmr changes in TWAS context specification, and fix a minor typo in update_twas_methods.
Lines 810–817: Save empty TWAS results as empty data frames to avoid the “unexpected end of file” error when running zcat twas.tsv.gz (does not affect downstream results).