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Add MultiQC support for all file formats. This includes updating the output filename convention, adding a sample name parameter, and improving the output format (now in JSON).

@jonperdomo jonperdomo linked an issue Jul 23, 2025 that may be closed by this pull request
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Current basic table format, shown is a test FASTA file:

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Added bam alignment statistics into separate sections:

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Added read length (Nxx) and GC content distrbution data:

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Added color scales for QC metrics:

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@jonperdomo jonperdomo removed a link to an issue Sep 10, 2025
@jonperdomo jonperdomo merged commit 4221fec into main Sep 10, 2025
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@jonperdomo jonperdomo deleted the 14-add-multiqc-support branch September 11, 2025 00:10
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