SRA downloader

Download fastqs from SRA easily.

Installation

Besides python/pip, the only requirement is wget.

git clone https://github.com/WarrenLab/sra_downloader.git
cd sra_downloader
pip install .

Usage

Download a single run:

sra_downloader SRR6364203

Download all runs from an experiment:

sra_downloader SRX4831284

TODO

• Implement unit and integration tests
• Allow retries on HTTP errors