JOSS paper

.github/workflows/joss.yaml

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+on: [push]
+
+jobs:
+  paper:
+    runs-on: ubuntu-latest
+    name: JOSS
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+      - name: Build draft PDF
+        uses: openjournals/openjournals-draft-action@master
+        with:
+          journal: joss
+          # This should be the path to the paper within your repo.
+          paper-path: vignettes/paper.md
+      - name: Upload
+        uses: actions/upload-artifact@v1
+        with:
+          name: paper
+          # This is the output path where Pandoc will write the compiled
+          # PDF. Note, this should be the same directory as the input
+          # paper.md
+          path: vignettes/paper.pdf

vignettes/paper.bib

@@ -0,0 +1,247 @@
+
+@article{yu-veridical-2020,
+	title = {Veridical data science},
+	volume = {117},
+	issn = {0027-8424, 1091-6490},
+	url = {http://www.pnas.org/lookup/doi/10.1073/pnas.1901326117},
+	doi = {10.1073/pnas.1901326117},
+	language = {en},
+	number = {8},
+	urldate = {2021-09-04},
+	journal = {Proceedings of the National Academy of Sciences},
+	author = {Yu, Bin and Kumbier, Karl},
+	month = feb,
+	year = {2020},
+	pages = {3920--3929},
+}
+
+@article{lang-batchtools-2017,
+	title = {{batchtools: {Tools} for {R} to work on batch systems}},
+	volume = {2},
+	issn = {2475-9066},
+	shorttitle = {batchtools},
+	url = {https://joss.theoj.org/papers/10.21105/joss.00135},
+	doi = {10.21105/joss.00135},
+	language = {en},
+	number = {10},
+	urldate = {2023-04-20},
+	journal = {Journal of Open Source Software},
+	author = {Lang, Michel and Bischl, Bernd and Surmann, Dirk},
+	month = feb,
+	year = {2017},
+	pages = {135},
+}
+
+@article{wickham-welcome-2019,
+	title = {Welcome to the {Tidyverse}},
+	volume = {4},
+	issn = {2475-9066},
+	url = {https://joss.theoj.org/papers/10.21105/joss.01686},
+	doi = {10.21105/joss.01686},
+	language = {en},
+	number = {43},
+	urldate = {2023-04-20},
+	journal = {Journal of Open Source Software},
+	author = {Wickham, Hadley and Averick, Mara and Bryan, Jennifer and Chang, Winston and McGowan, Lucy D'Agostino and François, Romain and Grolemund, Garrett and Hayes, Alex and Henry, Lionel and Hester, Jim and Kuhn, Max and Pedersen, Thomas Lin and Miller, Evan and Bache, Stephan Milton and Müller, Kirill and Ooms, Jeroen and Robinson, David and Seidel, Dana Paige and Spinu, Vitalie and Takahashi, Kohske and Vaughan, Davis and Wilke, Claus and Woo, Kara and Yutani, Hiroaki},
+	month = nov,
+	year = {2019},
+	pages = {1686},
+}
+
+@article{bengtsson-unifying-2021,
+	title = {A {Unifying} {Framework} for {Parallel} and {Distributed} {Processing} in {R} using {Futures}},
+	volume = {13},
+	issn = {2073-4859},
+	url = {https://journal.r-project.org/archive/2021/RJ-2021-048/index.html},
+	doi = {10.32614/RJ-2021-048},
+	language = {en},
+	number = {2},
+	urldate = {2023-04-20},
+	journal = {The R Journal},
+	author = {Bengtsson, Henrik},
+	year = {2021},
+	pages = {208},
+}
+
+@Manual{chang-r6-2022,
+  title = {{R6: Encapsulated Classes with Reference Semantics}},
+  author = {Winston Chang},
+  year = {2022},
+  url = {https://r6.r-lib.org},
+}
+
+@article{chalmers-simdesign-2020,
+    author =    {Chalmers, R. Philip AND Adkins, Mark C. },
+    journal =   {The Quantitative Methods for Psychology},
+    publisher = {TQMP},
+    title =     {{Writing Effective and Reliable Monte Carlo Simulations with the SimDesign Package}},
+    year =      {2020},
+    volume =    {16},
+    number =    {4},
+    pages =     {248-280},
+    url =       {http://www.tqmp.org/RegularArticles/vol16-4/p248/p248.pdf },
+    doi =       {10.20982/tqmp.16.4.p248},
+}
+
+@misc{kenny-simengine-2024,
+      title={{SimEngine: A Modular Framework for Statistical Simulations in R}},
+      author={Avi Kenny and Charles J. Wolock},
+      year={2024},
+      eprint={2403.05698},
+      archivePrefix={arXiv},
+      primaryClass={stat.CO},
+      url={https://doi.org/10.48550/arXiv.2403.05698},
+      doi={10.48550/arXiv.2403.05698},
+}
+
+@Manual{brown-simpr-2023,
+  title = {{simpr: Flexible 'Tidyverse'-Friendly Simulations}},
+  author = {Ethan Brown},
+  year = {2023},
+  url = {https://statisfactions.github.io/simpr/},
+}
+
+@article{gasparini-rsimsum-2018,
+	year = {2018},
+  publisher = {The Open Journal},
+	volume = {3},
+	number = {26},
+	pages = {739},
+	author = {Gasparini, Alessandro},
+	title = {{rsimsum: Summarise results from Monte Carlo simulation studies}},
+	journal = {Journal of Open Source Software},
+	url = {https://joss.theoj.org/papers/10.21105/joss.00739},
+  doi = {10.21105/joss.00739},
+}
+
+@article{blair-declaredesign-2019,
+    Author = {Blair, Graeme and Cooper, Jasper and Coppock, Alexander and Humphreys, Macartan},
+    Title = {{Declaring and Diagnosing Research Designs}},
+    Journal = {American Political Science Review},
+    Year = {2019},
+    Volume = {113},
+    Number = {3},
+    Pages = {838--859},
+    url = {https://doi.org/10.1017/S0003055419000194},
+    doi = {10.1017/S0003055419000194},
+}
+
+@Manual{joshi-simhelpers-2024,
+  title = {{simhelpers: Helper Functions for Simulation Studies}},
+  author = {Joshi, Megha and Pustejovsky, James},
+  year = {2024},
+  note = {R package version 0.2.0},
+  url = {https://meghapsimatrix.github.io/simhelpers/index.html},
+}
+
+@Manual{scheer-simTool-2020,
+  title = {{simTool: Conduct Simulation Studies with a Minimal Amount of Source Code}},
+  author = {Scheer, Marsel},
+  year = {2020},
+  note = {R package version 1.1.7},
+  url = {https://CRAN.R-project.org/packages=simTool},
+}
+
+@Manual{epskamp-parSim-2024,
+  title = {{parSim: Parallel Simulation Studies}},
+  author = {Sacha Epskamp},
+  year = {2023},
+  note = {R package version 0.1.5},
+  url = {https://CRAN.R-project.org/package=parSim},
+}
+
+@Manual{shilane-simitation-2023,
+  title = {{simitation: Simplified Simulations}},
+  author = {David Shilane and Srivastav Budugutta and Mayur Bansal},
+  year = {2023},
+  note = {R package version 0.0.7},
+  url = {https://CRAN.R-project.org/package=simitation},
+}
+
+@Manual{linner-tidyMC-2022,
+  title = {{tidyMC: Monte Carlo Simulations Made Easy and Tidy}},
+  author = {Stefan Linner and Ignacio {Moreira Lara} and Konstantin Lehmann},
+  year = {2022},
+  url = {https://github.com/stefanlinner/tidyMC},
+}
+
+@Article{ucar-simmer-2019,
+  title = {{simmer}: Discrete-Event Simulation for {R}},
+  author = {I{\~n}aki Ucar and Bart Smeets and Arturo Azcorra},
+  journal = {Journal of Statistical Software},
+  year = {2019},
+  volume = {90},
+  number = {2},
+  pages = {1--30},
+  url = {https://dogi.org/10.18637/jss.v090.i02},
+  doi = {10.18637/jss.v090.i02},
+}
+
+@Article{fatih-MonteCarloSEM-2021,
+  title = {{MonteCarloSEM: An R Package to Simulate Data for SEM}},
+  author = {Orcan, Fatih},
+  journal = {International Journal of Assessment Tools in Education},
+  year = {2021},
+  volume = {8},
+  number = {3},
+  pages = {704--713},
+  url = {https://dergipark.org.tr/en/download/article-file/1323860},
+  doi = {10.21449/ijate.804203},
+}
+
+@Misc{parsons-simMetric-2022,
+    title = {{simMetric: Metrics (with Uncertainty) for Simulation Studies that Evaluate Statistical Methods}},
+    author = {Rex Parsons},
+    publisher = {Queensland University of Technology},
+    year = {2022},
+    license = {MIT},
+    url = {https://doi.org/10.25912/RDF_1665114451679},
+    doi = {10.25912/RDF_1665114451679},
+    note = {R package version 0.1.9000},
+}
+
+@misc{bien-simulator-2016,
+      title={The {Simulator}: An {Engine} to {Streamline} {Simulations}},
+      author={Jacob Bien},
+      year={2016},
+      eprint={1607.00021},
+      archivePrefix={arXiv},
+      primaryClass={stat.CO},
+      url={https://doi.org/10.48550/arXiv.1607.00021},
+      doi={10.48550/arXiv.1607.00021},
+}
+
+@Article{couch-infer-2021,
+  title = {{infer}: An {R} package for tidyverse-friendly statistical inference},
+  author = {Simon P. Couch and Andrew P. Bray and Chester Ismay and Evgeni Chasnovski and Benjamin S. Baumer and Mine Çetinkaya-Rundel},
+  journal = {Journal of Open Source Software},
+  year = {2021},
+  volume = {6},
+  number = {65},
+  pages = {3661},
+  url = {https://joss.theoj.org/papers/10.21105/joss.03661},
+  doi = {10.21105/joss.03661},
+}
+
+@article{hofert-simsalapar-2016,
+ title={{Parallel and Other Simulations in R Made Easy: An End-to-End Study}},
+ volume={69},
+ url={https://doi.org/10.18637/jss.v069.i04},
+ doi={10.18637/jss.v069.i04},
+ number={4},
+ journal={Journal of Statistical Software},
+ author={Hofert, Marius and Mächler, Martin},
+ year={2016},
+ pages={1–44},
+}
+
+@misc{elliott-designing-2024,
+      title={Designing a Data Science simulation with MERITS: A Primer},
+      author={Corrine F Elliott and James Duncan and Tiffany M Tang and Merle Behr and Karl Kumbier and Bin Yu},
+      year={2024},
+      eprint={2403.08971},
+      archivePrefix={arXiv},
+      primaryClass={stat.CO},
+      url={https://arxiv.org/abs/2403.08971},
+      doi={10.48550/arXiv.2403.08971},
+}