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This repository contains materials, case studies, and project overview discussed during INFO 703/603 course by Dr. Jake Chen at UAB

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Biological Data Management [Course code: INFO703/603]

  • Goal: develop open-source drug discovery 2.0 components with data management backends
  • Requirements:
  • Cloud-based software solution
  • Must use existing published data source
  • Data source should include genes, drugs, diseases from general-purpose web resources with API/MCP support
  • Address as many points of data management / knowledge management as possible: data processing,
  • Must use existing data analysis pipeline (from papers, github, Galaxy, CFDE etc)
  • Agentic AI powered that can scale
  • Single-person or team of 2
  • The case studies should be aligned to Paper2Drug, Terrain2Drug, Market2Drug, or Phenotype2Drug
  • Must have some database backend to store sessions, memories, user profiles, preferences, states, etc
  • Contact: Prof. Jake Chen, jakechen@uab.edu

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This repository contains materials, case studies, and project overview discussed during INFO 703/603 course by Dr. Jake Chen at UAB

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