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@arjunrajlaboratory

Arjun Raj's systems biology lab

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  1. NimbusImage NimbusImage Public

    UPenn ?

    Vue 16 6

  2. DeepTile DeepTile Public

    Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.

    Python 13 2

  3. ProbeDesign ProbeDesign Public

    MATLAB 4 3

  4. NetworkModeling_RareCellVariability_Code NetworkModeling_RareCellVariability_Code Public

    Code corresponding to paper 'Gene networks with transcriptional bursting recapitulate rare transient coordinated high expression states in cancer'

    MATLAB 2

  5. rajlabimagetools rajlabimagetools Public

    MATLAB 2 4

  6. KallistoSleuth KallistoSleuth Public

    Bulk RNA-seq pipeline to perform pseudoalignment and analysis using Lior Pachter's kallisto and sleuth.

    R 2 1

Repositories

Showing 10 of 52 repositories
  • NimbusImage Public

    UPenn ?

    arjunrajlaboratory/NimbusImage’s past year of commit activity
    Vue 16 Apache-2.0 6 127 8 Updated Jan 7, 2026
  • ImageAnalysisProject Public
    arjunrajlaboratory/ImageAnalysisProject’s past year of commit activity
    Python 0 2 0 0 Updated Jan 5, 2026
  • tools-for-science Public
    arjunrajlaboratory/tools-for-science’s past year of commit activity
    2 Apache-2.0 1 0 0 Updated Dec 30, 2025
  • NimbusImageGitBook Public
    arjunrajlaboratory/NimbusImageGitBook’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Dec 29, 2025
  • CondensateNet Public

    Model for segmenting condensates in fluorescence microscopy

    arjunrajlaboratory/CondensateNet’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 20, 2025
  • cellularmemory Public
    arjunrajlaboratory/cellularmemory’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 2, 2025
  • DeepTile Public

    Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.

    arjunrajlaboratory/DeepTile’s past year of commit activity
    Python 13 MIT 2 0 0 Updated Nov 17, 2025
  • ProbeDesign Public
    arjunrajlaboratory/ProbeDesign’s past year of commit activity
    MATLAB 4 3 1 2 Updated Jul 19, 2025
  • melanoma_geomx_public Public

    Code for melanoma geomx, spatialgenomics paper

    arjunrajlaboratory/melanoma_geomx_public’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 27, 2025
  • SGanalysis Public

    Analysis for Spatial Genomics GenePS data

    arjunrajlaboratory/SGanalysis’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Mar 3, 2025
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