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Installation notes: * Requires GNU Scientific Library for RNG. brumbrella.cc : 1D BD simulation code, on bistable potential, : with optional umbrella potential diff_model.cc : utilities for fitting 1D diffusive models diff_model.h : utilities for fitting 1D diffusive models diffit.cc : master code for 1D diffusive fits thist.cc : code for constructing transition matrices "oven-ready" : for input to diffit example_fit.csh : a helpful example of fitting data from long simulations at equilibrium, no bias/umbrella - generates brownian dynamics data - bins it into transition matrix - fits diffusion model test_umbrella.csh : a less helpful example but which nonetheless illustrates more of the code's functionality
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