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Comprehensive Refactoring Plan for artMS R Package Modernization

Status: Open.

#199 In biodavidjm/artMS;

· biodavidjm opened on Oct 30, 2025

Can you add the variance explained by PCs in the PCA plots?

Status: Open.

#198 In biodavidjm/artMS;

· ladveirm opened on Oct 30, 2024

Question about filtering conditions with MSstats quantification

Status: Open.

#197 In biodavidjm/artMS;

· mstaniak opened on Jul 11, 2023

Could you please add MSStats removeFewMeasurements argument in the config.yaml?

Status: Open.

#196 In biodavidjm/artMS;

· weixiandeng opened on Nov 3, 2022

Feature request: allow duplications for artmsMapUniprot2Entrez

Status: Open.

#195 In biodavidjm/artMS;

· vivaciousvijaya opened on Jul 5, 2022

Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'select': object 'org.Mm.eg.db' not found

2 - Working <= 5

Fixfix stufffix stuff

Status: Open.

#194 In biodavidjm/artMS;

· vivaciousvijaya opened on Jun 12, 2022

Question about SILAC data analysis

Status: Open.

#192 In biodavidjm/artMS;

· giuliof95 opened on Jan 26, 2022

Problem about user-defined modification type

Status: Open.

#191 In biodavidjm/artMS;

· Wang-Xuejun opened on Oct 28, 2021

Error: Assigned data <code>dfdc.final[[x]] - dfdc.final[[y]]</code> must be compatible with existing data

Status: Open.

#190 In biodavidjm/artMS;

· jfertaj opened on Sep 13, 2021

question about user modification

2 - Working <= 5

Status: Open.

#189 In biodavidjm/artMS;

· hemingwang opened on Aug 11, 2021

Deprecate protein complex enrichment analysis

deprecateDeprecate a featureDeprecate a feature

Status: Open.

#188 In biodavidjm/artMS;

· biodavidjm opened on Jul 29, 2021

Replace gProfileR by gprofiler2

Fixfix stufffix stuff

Status: Open.

#187 In biodavidjm/artMS;

· biodavidjm opened on Jul 29, 2021