Multishell#97

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bcmcpher wants to merge 19 commits intobrain-life:masterfrom

bcmcpher:multishell

Commits on Nov 11, 2020

initial commit to new fork from old (?) brain-life repo. just comment note, pre changes
Brent McPherson
committed

Commits on Nov 13, 2020

added multishell support / partial implementation of kutosis forward model
Brent McPherson
committed
added / modified files for new virtual lesion test
bcmcpher
committed

Commits on Nov 14, 2020

modified to look for modelKurtosis in fe and estimate the apparent kurtosis coefficient (akc); modifications for multishell data - bookmark, not for release
bcmcpher
committed
changes for passing multishell / kurtosis parameters, fixed .gitignore for *.m~ files
bcmcpher
committed
adjusted refs to shell so demeaning actully happens
bcmcpher
committed

Commits on Nov 16, 2020

add current version of feBuildDictionary that will fit kurtosis model to LiFE forward model
bcmcpher
committed

Commits on Nov 20, 2020

build and write kurtosis dictionary in feBuildDictionaries, but use tensor model still - this is still locked on even when the kurtosis model isnt valid. Split one long print statement into 3 lines…
bcmcpher
committed

Commits on Nov 30, 2020

fix feGet(fe, dsigdemeaned) by transposing input to match what was apparently the original orientation of the data for linear indexing
bcmcpher
committed

Commits on Dec 2, 2020

Commits on Dec 11, 2020

added feGet/feSet options for getting offset from input files, modified feConnectomeInit to pass warnings if a mismatch in file orientations is detected
bcmcpher
committed

Commits on Dec 13, 2020

added flip correction as a fix if it detects one, streamlined storage of offset / header info
bcmcpher
committed

Commits on Mar 11, 2021

added checks to loading multishell info to fill in old single shell structures
bcmcpher
committed

Commits on Mar 12, 2021

add an isdeployed check around mex fxns so they can be compiled
bcmcpher
committed

Commits on Mar 29, 2021

renamed fxn for sanity in debugging
bcmcpher
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Commits on Apr 2, 2021

added function to convert 3d tensor to 2d matrix for optimization
bcmcpher
committed
updated documentation
bcmcpher
committed
preallocate and print useful updates in feSparseMatrixCoords
Brent McPherson
committed